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Ryan Morin edited this page Dec 16, 2024 · 21 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

[[TOC]]

<<Warn("The variants reported in this gene in DLBCL failed QC")>>

Relevance tier by entity

Entity Tier Description
DLBCL 3 Retired, Failed QC[@reddyGeneticFunctionalDrivers2017]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 4.21
DLBCL Schmitz cohort 3.62
DLBCL Reddy cohort 3.30
DLBCL Chapuy cohort 6.41

Mutation pattern and selective pressure estimates

include:dnds_PTPRK.md

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

PTPRK Expression

All Mutations

Reddy_2095T Reddy_2135T Reddy_2215T Reddy_2234T Reddy_2261T Reddy_2293T Reddy_2469T Reddy_2567T Reddy_2657T Reddy_2664T Reddy_2764T Reddy_2826T Reddy_2838T Reddy_2956T Reddy_3470T Reddy_3525T Reddy_3620T Reddy_3629T Reddy_3637T Reddy_3682T Reddy_3689T Reddy_3698T Reddy_3756T Reddy_3757T Reddy_3759T Reddy_3780T Reddy_3872T Reddy_3893T Reddy_3911T Reddy_3937T Reddy_823T

include:mermaid_PTPRK.md

References

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