pairtree requires older version of numpy

[agorelick]

Hi, pairtree does not work with the latest version of numpy. This appears to be the same issue as mentioned here in the pyclone-vi github issues: Roth-Lab/pyclone-vi#28.

To fix this, I edited the requirements.txt file so that version 1.23.5 of numpy is used: numpy = 1.23.5, then re-installed:
conda remove --name pairtree --all
conda create -c conda-forge -n pairtree --file requirements.txt --yes

[oghzzang]

I'm not a developer. But I used the pairtree recently.
It worked well!
My python version is 3.11.7, and my numpy version is 1.26.3.

I installed it like you using conda.
I think you can try to define the python version when you install conda.

[alexanderchang1]

I think it would be a good idea for the requirement.txt file to specify version number to avoid this issue. Scipy and Numba aren't updated in lockstep and these breaks will become only more common as time goes on.

[ethanumn]

I've updated the requirements.txt file with the latest versions that do not seem to cause any dependency issues. Please let me know if this works on your end.