Code used to onboard the malariasimulation package.
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01_cluster_setup.R: Runs a simple test job on the cluster.
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02_single_country.R: Runs sites on the sites
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03_model_post_processing.R: Processes model outputs to produce aggregated cases, deaths, and DALYs for a single country.
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04_specify_future_scenarios.R: Runs two scenarios (one with intervention scale-up and one without intervention scale-up). Started with MDA and RTS,S vaccination, but could be updated to be more modular/ scalable in the future.
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05_scenario_post_processing.R: Runs post-processing on scenario model outputs.