diff --git a/R/antimalarial_resistance.R b/R/antimalarial_resistance.R
index d4712a25..532c042b 100644
--- a/R/antimalarial_resistance.R
+++ b/R/antimalarial_resistance.R
@@ -92,7 +92,7 @@ set_antimalarial_resistance <- function(parameters,
 #' treatment has been administered in the current time step.
 #' 
 #' @param parameters the model parameters
-#' @param drug vector of integers representing the drugs administered to each individual receiving treatment
+#' @param drugs vector of integers representing the drugs administered to each individual receiving treatment
 #' @param timestep the current time step
 get_antimalarial_resistance_parameters <- function(parameters, drugs, timestep) {
   
diff --git a/man/CorrelationParameters.Rd b/man/CorrelationParameters.Rd
index b1d22578..c2e6ada7 100644
--- a/man/CorrelationParameters.Rd
+++ b/man/CorrelationParameters.Rd
@@ -14,17 +14,17 @@ Describes an event in the simulation
 \section{Methods}{
 \subsection{Public methods}{
 \itemize{
-\item \href{#method-new}{\code{CorrelationParameters$new()}}
-\item \href{#method-inter_round_rho}{\code{CorrelationParameters$inter_round_rho()}}
-\item \href{#method-inter_intervention_rho}{\code{CorrelationParameters$inter_intervention_rho()}}
-\item \href{#method-sigma}{\code{CorrelationParameters$sigma()}}
-\item \href{#method-mvnorm}{\code{CorrelationParameters$mvnorm()}}
-\item \href{#method-clone}{\code{CorrelationParameters$clone()}}
+\item \href{#method-CorrelationParameters-new}{\code{CorrelationParameters$new()}}
+\item \href{#method-CorrelationParameters-inter_round_rho}{\code{CorrelationParameters$inter_round_rho()}}
+\item \href{#method-CorrelationParameters-inter_intervention_rho}{\code{CorrelationParameters$inter_intervention_rho()}}
+\item \href{#method-CorrelationParameters-sigma}{\code{CorrelationParameters$sigma()}}
+\item \href{#method-CorrelationParameters-mvnorm}{\code{CorrelationParameters$mvnorm()}}
+\item \href{#method-CorrelationParameters-clone}{\code{CorrelationParameters$clone()}}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-new"></a>}}
-\if{latex}{\out{\hypertarget{method-new}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-new"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-new}{}}}
 \subsection{Method \code{new()}}{
 initialise correlation parameters
 \subsection{Usage}{
@@ -40,8 +40,8 @@ initialise correlation parameters
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-inter_round_rho"></a>}}
-\if{latex}{\out{\hypertarget{method-inter_round_rho}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-inter_round_rho"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-inter_round_rho}{}}}
 \subsection{Method \code{inter_round_rho()}}{
 Add rho between rounds
 \subsection{Usage}{
@@ -60,8 +60,8 @@ the intervention}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-inter_intervention_rho"></a>}}
-\if{latex}{\out{\hypertarget{method-inter_intervention_rho}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-inter_intervention_rho"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-inter_intervention_rho}{}}}
 \subsection{Method \code{inter_intervention_rho()}}{
 Add rho between interventions
 \subsection{Usage}{
@@ -83,8 +83,8 @@ the intervention}
 }
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-sigma"></a>}}
-\if{latex}{\out{\hypertarget{method-sigma}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-sigma"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-sigma}{}}}
 \subsection{Method \code{sigma()}}{
 Standard deviation of each intervention between rounds
 \subsection{Usage}{
@@ -93,8 +93,8 @@ Standard deviation of each intervention between rounds
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-mvnorm"></a>}}
-\if{latex}{\out{\hypertarget{method-mvnorm}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-mvnorm"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-mvnorm}{}}}
 \subsection{Method \code{mvnorm()}}{
 multivariate norm draws for these parameters
 \subsection{Usage}{
@@ -103,8 +103,8 @@ multivariate norm draws for these parameters
 
 }
 \if{html}{\out{<hr>}}
-\if{html}{\out{<a id="method-clone"></a>}}
-\if{latex}{\out{\hypertarget{method-clone}{}}}
+\if{html}{\out{<a id="method-CorrelationParameters-clone"></a>}}
+\if{latex}{\out{\hypertarget{method-CorrelationParameters-clone}{}}}
 \subsection{Method \code{clone()}}{
 The objects of this class are cloneable with this method.
 \subsection{Usage}{
diff --git a/man/get_antimalarial_resistance_parameters.Rd b/man/get_antimalarial_resistance_parameters.Rd
index 34c0a9c6..71de6961 100644
--- a/man/get_antimalarial_resistance_parameters.Rd
+++ b/man/get_antimalarial_resistance_parameters.Rd
@@ -9,9 +9,9 @@ get_antimalarial_resistance_parameters(parameters, drugs, timestep)
 \arguments{
 \item{parameters}{the model parameters}
 
-\item{timestep}{the current time step}
+\item{drugs}{vector of integers representing the drugs administered to each individual receiving treatment}
 
-\item{drug}{vector of integers representing the drugs administered to each individual receiving treatment}
+\item{timestep}{the current time step}
 }
 \description{
 Retrieve the resistance parameters associated with the drug each individual receiving clinical