diff --git a/404.html b/404.html index 84a3af48..3cd320fb 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/LICENSE-text.html b/LICENSE-text.html index d7d33f40..84a58ce4 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/LICENSE.html b/LICENSE.html index 0988bdb0..02b733a5 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Antimalarial_Resistance.html b/articles/Antimalarial_Resistance.html index ecd2c31e..bce458e5 100644 --- a/articles/Antimalarial_Resistance.html +++ b/articles/Antimalarial_Resistance.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Carrying-capacity.html b/articles/Carrying-capacity.html index dff6b7e1..45031fd9 100644 --- a/articles/Carrying-capacity.html +++ b/articles/Carrying-capacity.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Demography.html b/articles/Demography.html index cac3418e..3c16b007 100644 --- a/articles/Demography.html +++ b/articles/Demography.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/EIRprevmatch.html b/articles/EIRprevmatch.html index 6c28e0c8..39ccb259 100644 --- a/articles/EIRprevmatch.html +++ b/articles/EIRprevmatch.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/MDA.html b/articles/MDA.html index d4a4821f..5102d5d3 100644 --- a/articles/MDA.html +++ b/articles/MDA.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Metapopulation.html b/articles/Metapopulation.html index 5faee411..b1e68882 100644 --- a/articles/Metapopulation.html +++ b/articles/Metapopulation.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Model.html b/articles/Model.html index aede42eb..fd172bd3 100644 --- a/articles/Model.html +++ b/articles/Model.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Parameter_variation.html b/articles/Parameter_variation.html index 788520c7..fa6b48b0 100644 --- a/articles/Parameter_variation.html +++ b/articles/Parameter_variation.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/SetSpecies.html b/articles/SetSpecies.html index 93baa5d7..578c1d44 100644 --- a/articles/SetSpecies.html +++ b/articles/SetSpecies.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Treatment.html b/articles/Treatment.html index e66218a0..201072c7 100644 --- a/articles/Treatment.html +++ b/articles/Treatment.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Vaccines.html b/articles/Vaccines.html index 2892779b..4342423d 100644 --- a/articles/Vaccines.html +++ b/articles/Vaccines.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Variation.html b/articles/Variation.html index f496c539..92c1192f 100644 --- a/articles/Variation.html +++ b/articles/Variation.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/Variation_files/figure-html/unnamed-chunk-6-1.png b/articles/Variation_files/figure-html/unnamed-chunk-6-1.png index cc19b2a4..8bbd124e 100644 Binary files a/articles/Variation_files/figure-html/unnamed-chunk-6-1.png and b/articles/Variation_files/figure-html/unnamed-chunk-6-1.png differ diff --git a/articles/VectorControl_Bednets.html b/articles/VectorControl_Bednets.html index ee724fae..f5108162 100644 --- a/articles/VectorControl_Bednets.html +++ b/articles/VectorControl_Bednets.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/VectorControl_IRS.html b/articles/VectorControl_IRS.html index 8bad106a..c2ab0959 100644 --- a/articles/VectorControl_IRS.html +++ b/articles/VectorControl_IRS.html @@ -32,7 +32,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/articles/index.html b/articles/index.html index 84dc362e..68592fcd 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/authors.html b/authors.html index 6cab1ce9..5cb2f6f5 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 @@ -145,13 +145,13 @@

Citation

Charles G, Winskill P, Topazian H, Challenger J, Fitzjohn R, Sheppard R, Brewer T, McCain K, Haile L (2024). malariasimulation: An individual based model for malaria. -R package version 2.0.0. +R package version 2.0.1. 

@Manual{,
   title = {malariasimulation: An individual based model for malaria},
   author = {Giovanni Charles and Peter Winskill and Hillary Topazian and Joseph Challenger and Richard Fitzjohn and Richard Sheppard and Tom Brewer and Kelly McCain and Lydia Haile},
   year = {2024},
-  note = {R package version 2.0.0},
+  note = {R package version 2.0.1},
 }
diff --git a/index.html b/index.html index 4963a137..5b7278de 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/news/index.html b/news/index.html index b8dd74f1..5402f19d 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 @@ -93,6 +93,10 @@

Changelog

+
+

malariasimulation 2.0.1

+

malariasimulation 2.0.0

Release v2.0.0. This will mark our shift to semver 2.0.0 for versioning, i.e:

diff --git a/pkgdown.yml b/pkgdown.yml index 76200597..9d49bacd 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -16,4 +16,4 @@ articles: Variation: Variation.html VectorControl_Bednets: VectorControl_Bednets.html VectorControl_IRS: VectorControl_IRS.html -last_built: 2024-10-03T14:09Z +last_built: 2024-12-27T12:08Z diff --git a/reference/AL_params.html b/reference/AL_params.html index 6517421b..4f21a3f5 100644 --- a/reference/AL_params.html +++ b/reference/AL_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1
diff --git a/reference/CorrelationParameters.html b/reference/CorrelationParameters.html index 813e734c..e08b0ee6 100644 --- a/reference/CorrelationParameters.html +++ b/reference/CorrelationParameters.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/DHA_PQP_params.html b/reference/DHA_PQP_params.html index 60f4b9f4..164b5b03 100644 --- a/reference/DHA_PQP_params.html +++ b/reference/DHA_PQP_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/SP_AQ_params.html b/reference/SP_AQ_params.html index 60c708d1..5e9898c8 100644 --- a/reference/SP_AQ_params.html +++ b/reference/SP_AQ_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/arab_params.html b/reference/arab_params.html index aa7c9215..82c92093 100644 --- a/reference/arab_params.html +++ b/reference/arab_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/calculate_carrying_capacity.html b/reference/calculate_carrying_capacity.html index e18f8455..2e6f642d 100644 --- a/reference/calculate_carrying_capacity.html +++ b/reference/calculate_carrying_capacity.html @@ -19,7 +19,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/create_pev_profile.html b/reference/create_pev_profile.html index 188fe4a8..b63b6be9 100644 --- a/reference/create_pev_profile.html +++ b/reference/create_pev_profile.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/create_progress_process.html b/reference/create_progress_process.html index c7970ab5..f14b8aa7 100644 --- a/reference/create_progress_process.html +++ b/reference/create_progress_process.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/find_birthrates.html b/reference/find_birthrates.html index 94fdd59c..ae8d9af0 100644 --- a/reference/find_birthrates.html +++ b/reference/find_birthrates.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/fun_params.html b/reference/fun_params.html index 70ab5c30..e96bb19c 100644 --- a/reference/fun_params.html +++ b/reference/fun_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/gamb_params.html b/reference/gamb_params.html index a63cd34c..55d8349c 100644 --- a/reference/gamb_params.html +++ b/reference/gamb_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/get_antimalarial_resistance_parameters.html b/reference/get_antimalarial_resistance_parameters.html index 1f7fb567..9f67d2e7 100644 --- a/reference/get_antimalarial_resistance_parameters.html +++ b/reference/get_antimalarial_resistance_parameters.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/get_correlation_parameters.html b/reference/get_correlation_parameters.html index ec4955cc..3a060a5e 100644 --- a/reference/get_correlation_parameters.html +++ b/reference/get_correlation_parameters.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/get_init_carrying_capacity.html b/reference/get_init_carrying_capacity.html index 761e930a..cd5d7ccd 100644 --- a/reference/get_init_carrying_capacity.html +++ b/reference/get_init_carrying_capacity.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/get_parameters.html b/reference/get_parameters.html index 8da72d47..0ecbebb2 100644 --- a/reference/get_parameters.html +++ b/reference/get_parameters.html @@ -20,7 +20,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/index.html b/reference/index.html index 8f96da7c..43e66e57 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/parameter_draws.html b/reference/parameter_draws.html index a025666c..19e1d332 100644 --- a/reference/parameter_draws.html +++ b/reference/parameter_draws.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/parameterise_mosquito_equilibrium.html b/reference/parameterise_mosquito_equilibrium.html index aff4a983..7d7fd524 100644 --- a/reference/parameterise_mosquito_equilibrium.html +++ b/reference/parameterise_mosquito_equilibrium.html @@ -22,7 +22,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/parameterise_total_M.html b/reference/parameterise_total_M.html index 9245e068..393376a5 100644 --- a/reference/parameterise_total_M.html +++ b/reference/parameterise_total_M.html @@ -19,7 +19,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/peak_season_offset.html b/reference/peak_season_offset.html index 3f1b7b95..8fe706f6 100644 --- a/reference/peak_season_offset.html +++ b/reference/peak_season_offset.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/r21_booster_profile.html b/reference/r21_booster_profile.html index 49b1880f..2dae0d81 100644 --- a/reference/r21_booster_profile.html +++ b/reference/r21_booster_profile.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/r21_profile.html b/reference/r21_profile.html index a53005d9..b3c5d2cb 100644 --- a/reference/r21_profile.html +++ b/reference/r21_profile.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/rtss_booster_profile.html b/reference/rtss_booster_profile.html index 0c5130b8..c029ee19 100644 --- a/reference/rtss_booster_profile.html +++ b/reference/rtss_booster_profile.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/rtss_profile.html b/reference/rtss_profile.html index b03a5d39..006b9617 100644 --- a/reference/rtss_profile.html +++ b/reference/rtss_profile.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/run_metapop_simulation.html b/reference/run_metapop_simulation.html index 231822c4..d79a93db 100644 --- a/reference/run_metapop_simulation.html +++ b/reference/run_metapop_simulation.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/run_resumable_simulation.html b/reference/run_resumable_simulation.html index f85db873..8d9c16d3 100644 --- a/reference/run_resumable_simulation.html +++ b/reference/run_resumable_simulation.html @@ -19,7 +19,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/run_simulation.html b/reference/run_simulation.html index 707d0ce3..ceae2839 100644 --- a/reference/run_simulation.html +++ b/reference/run_simulation.html @@ -90,7 +90,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/run_simulation_with_repetitions.html b/reference/run_simulation_with_repetitions.html index 0e29eea1..c3f17016 100644 --- a/reference/run_simulation_with_repetitions.html +++ b/reference/run_simulation_with_repetitions.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_antimalarial_resistance.html b/reference/set_antimalarial_resistance.html index 50d2a70e..fa22e4f4 100644 --- a/reference/set_antimalarial_resistance.html +++ b/reference/set_antimalarial_resistance.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_bednets.html b/reference/set_bednets.html index d087111a..23464649 100644 --- a/reference/set_bednets.html +++ b/reference/set_bednets.html @@ -27,7 +27,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_carrying_capacity.html b/reference/set_carrying_capacity.html index e9051d1e..0708494e 100644 --- a/reference/set_carrying_capacity.html +++ b/reference/set_carrying_capacity.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_clinical_treatment.html b/reference/set_clinical_treatment.html index 66915a3c..9f8fbb62 100644 --- a/reference/set_clinical_treatment.html +++ b/reference/set_clinical_treatment.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_demography.html b/reference/set_demography.html index d6030e0e..9c25145f 100644 --- a/reference/set_demography.html +++ b/reference/set_demography.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_drugs.html b/reference/set_drugs.html index 4288f130..023b2fc2 100644 --- a/reference/set_drugs.html +++ b/reference/set_drugs.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_epi_outputs.html b/reference/set_epi_outputs.html index df606ed7..a2d5ad37 100644 --- a/reference/set_epi_outputs.html +++ b/reference/set_epi_outputs.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_equilibrium.html b/reference/set_equilibrium.html index 8d09a648..3bdeb4d5 100644 --- a/reference/set_equilibrium.html +++ b/reference/set_equilibrium.html @@ -19,7 +19,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_mass_pev.html b/reference/set_mass_pev.html index 1b4b7b8c..4121f140 100644 --- a/reference/set_mass_pev.html +++ b/reference/set_mass_pev.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_mda.html b/reference/set_mda.html index 3a06dacf..b2426d9d 100644 --- a/reference/set_mda.html +++ b/reference/set_mda.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_parameter_draw.html b/reference/set_parameter_draw.html index 11a19605..3d17880c 100644 --- a/reference/set_parameter_draw.html +++ b/reference/set_parameter_draw.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_pev_epi.html b/reference/set_pev_epi.html index f0733da1..59aeeba1 100644 --- a/reference/set_pev_epi.html +++ b/reference/set_pev_epi.html @@ -18,7 +18,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_pmc.html b/reference/set_pmc.html index 94a14be3..b5520be5 100644 --- a/reference/set_pmc.html +++ b/reference/set_pmc.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_smc.html b/reference/set_smc.html index 1281011f..fd9b73a5 100644 --- a/reference/set_smc.html +++ b/reference/set_smc.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_species.html b/reference/set_species.html index bf5674d6..0d839acf 100644 --- a/reference/set_species.html +++ b/reference/set_species.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_spraying.html b/reference/set_spraying.html index 7dc6a4c9..acb1ad78 100644 --- a/reference/set_spraying.html +++ b/reference/set_spraying.html @@ -24,7 +24,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/set_tbv.html b/reference/set_tbv.html index df2f9df6..948bfe32 100644 --- a/reference/set_tbv.html +++ b/reference/set_tbv.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1 diff --git a/reference/steph_params.html b/reference/steph_params.html index 7ae41e40..910c3907 100644 --- a/reference/steph_params.html +++ b/reference/steph_params.html @@ -17,7 +17,7 @@ malariasimulation - 2.0.0 + 2.0.1