Feat/metapopulation model #259
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* Add rdt testing parameters * Update biting_process to consider rdt testing for mixing
- updating metapop vignette - clarifying row & col meanings
* Add rdt testing parameters * Update biting_process to consider rdt testing for mixing
* refactor transmission mixing code * fix regressions * add time caching
* Added export_mixing and import_mixing arguments to run_metapop_... * Update create_transmission_mixer to mix eir on import and foim on export * Fix regression tests
Add asymmetric transmission in mixing:
change mixing to export_mixing and import_mixing
plietar
approved these changes
Jun 26, 2024
.gitignore
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@giovannic do you know why this was added?
Co-authored-by: Paul Liétar <[email protected]>
Co-authored-by: Paul Liétar <[email protected]>
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Thanks @plietar, essentially we are fixing some assumptions in how the metapopulation model mixing matrix is made to allow for different effects on FOIM and EIR. We have done a lot of testing with it, but thanks for providing another set of eyes to the changes! |
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