diff --git a/src/sars_delays/orderly.R b/src/sars_delays/orderly.R index 7da3db8b..4cc79b4b 100644 --- a/src/sars_delays/orderly.R +++ b/src/sars_delays/orderly.R @@ -85,7 +85,9 @@ m2 <- metamean_wrap(dataframe = d2, estmeansd_method = "Cai", width = 9500, height = 4200, resolution = 1000) # admission to outcome... -outcome_forest <- forest_plot(d3 %>% filter(qa_score>0.5),'Admission to outcome',"parameter_type",c(0,50),text_size = 22) +outcome_forest <- forest_plot(d3 %>% filter(qa_score>0.5) %>% + mutate(parameter_type = stringr::str_to_title(str_replace(parameter_type,'Human delay - ',''))), + 'Admission to outcome',"parameter_type",c(0,60),text_size = 22) layout <- " AABB# @@ -93,7 +95,17 @@ CCDD# EEFFF EEFFF " -delays_plot <- SI_forest + outcome_forest + GT_forest + IP_forest + m1$plot + m2$plot + plot_layout(design = layout) + plot_annotation(tag_levels = 'A') +delays_plot <- SI_forest + outcome_forest + GT_forest + IP_forest + m1$plot + m2$plot + plot_layout(design = layout) + plot_annotation(tag_levels = 'A') -ggsave("figure_delays.png", plot = delays_plot, width = 39, height = 23) -ggsave("figure_delays.pdf", plot = delays_plot, width = 39, height = 23) +ggsave("figure_delays.png", plot = delays_plot, width = 39, height = 22) +ggsave("figure_delays.pdf", plot = delays_plot, width = 39, height = 22) + + +layout2 <- " +AAABBBDDD +EEEEFFFFF +EEEEFFFFF +" +delays_plot2 <- SI_forest + IP_forest + outcome_forest + m1$plot + theme(text = element_text(size = 22)) + m2$plot + theme(text = element_text(size = 22)) + + plot_layout(design = layout2) + plot_annotation(tag_levels = 'A') +ggsave("figure_delays2.png", plot = delays_plot2, width = 39, height = 22)