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ms609 committed Apr 3, 2024
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6 changes: 3 additions & 3 deletions R/Consistency.R
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#' number of steps in a parsimonious reconstruction on the longest possible tree
#' for a character.
#' The **retention index** is the maximum length of a character minus the number
#' of steps observed on a given tree; divided by the maxmimum length minus the
#' of steps observed on a given tree; divided by the maximum length minus the
#' minimum length. It is interpreted as the ratio between the observed
#' homoplasy, and the maximum observed homoplasy, and scales from zero (perfect
#' fit) to one (worst fit that can be reconstructed under parsimony).
#' homoplasy, and the maximum observed homoplasy, and scales from zero
#' (worst fit that can be reconstructed under parsimony) to one (perfect fit).
#'
#' The **rescaled consistency index** is the product of the consistency and
#' retention indices; it rescales the consistency index such that its range of
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6 changes: 3 additions & 3 deletions man/Consistency.Rd

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