From 11200c224489840533a6c22d3e9c584f96ab4fa1 Mon Sep 17 00:00:00 2001 From: darrelln32 Date: Mon, 30 Sep 2024 09:32:51 -0400 Subject: [PATCH] Update run_param_config.py talking out HC_ACCESS entry that point to ACCESS_v2. We are only using ACCESS_v1 for now --- scripts/run_param_config.py | 8 -------- 1 file changed, 8 deletions(-) diff --git a/scripts/run_param_config.py b/scripts/run_param_config.py index 075f564..312c34e 100644 --- a/scripts/run_param_config.py +++ b/scripts/run_param_config.py @@ -580,14 +580,6 @@ def get_ordered_dic(unordered_dic): MD: "yes", HAPLOTYPE_MAP: "/home/igo/fingerprint_maps/map_files/hg38_no_chr_ACCESS_unordered.map" }, - "HC_ACCESS": { - # MSK-ACCESS_v2 - BAITS: "/igo/home/igo/resources/ilist/hg38/MSK-ACCESS-v2/MSK-ACCESS-v2_0-probesAllwFP.baits", - TARGETS: "/igo/home/igo/resources/ilist/hg38/MSK-ACCESS-v2/MSK-ACCESS-v2_0-probesAllwFP.targets", - MSKQ: "no", - MD: "yes", - HAPLOTYPE_MAP: "/home/igo/fingerprint_maps/map_files/hg38_no_chr_ACCESS_unordered.map" - }, "PanCancerV2": { BAITS: "/home/igo/resources/BED-Targets/PanCancerV2/PanCancerV2_BAITS.iList", TARGETS: "/home/igo/resources/BED-Targets/PanCancerV2/PanCancerV2_TARGETS.iList",