From 8407306612f2473bb12758e3034298391ded11d9 Mon Sep 17 00:00:00 2001 From: darrelln32 Date: Mon, 3 Jun 2024 13:52:23 -0400 Subject: [PATCH] Update demux_run_dag.py updated recipes from DLP to SC_DLP --- demux_run_dag.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/demux_run_dag.py b/demux_run_dag.py index aa026bb..c69ccd4 100644 --- a/demux_run_dag.py +++ b/demux_run_dag.py @@ -107,7 +107,7 @@ def demux(ds, **kwargs): def get_dlp_chip(samplesheet, project): samplesheet.df_ss_data.reset_index() for index, row in samplesheet.df_ss_data.iterrows(): - if row['Sample_Well'] == 'DLP' and project == row['Sample_Project']: + if row['Sample_Well'] == 'SC_DLP' and project == row['Sample_Project']: # return chip from 071PP_DLP_UNSORTED_128624A_13_12_IGO_09443_CU_1_1_121 sample = row['Sample_ID'] return get_dlp_chip_from_sample_name(sample) @@ -135,7 +135,7 @@ def stats(ds, **kwargs): if "REFERENCE" in samplesheet_path: return "No stats for reference " + samplesheet_path - if "DLP" in sample_sheet.recipe_set: + if "SC_DLP" in sample_sheet.recipe_set: scripts.get_total_reads_from_demux.run_DLP(sample_sheet, sequencer_and_run) scripts.upload_stats.upload_stats(sequencer_and_run)