diff --git a/scripts/cellranger_config.py b/scripts/cellranger_config.py index c41c53e..811520a 100644 --- a/scripts/cellranger_config.py +++ b/scripts/cellranger_config.py @@ -19,7 +19,7 @@ } }, "multi": { - "tool": " /igo/work/nabors/tools/cellranger-8.0.0/cellranger multi " + "tool": " /igo/work/tools/cellranger-8.0.1/cellranger multi " }, "arc": { "tool": " /igo/work/nabors/tools/cellranger-arc-2.0.2/cellranger-arc count ", diff --git a/scripts/cellranger_multi.py b/scripts/cellranger_multi.py index 1964511..78b2827 100644 --- a/scripts/cellranger_multi.py +++ b/scripts/cellranger_multi.py @@ -11,21 +11,21 @@ ACCESS = 0o775 config_dict = { "count": { - "tool": " /igo/work/nabors/tools/cellranger-7.0.0/cellranger count ", + "tool": " /igo/work/tools/cellranger-8.0.1/cellranger count ", "genome": { "Human": " --transcriptome=/igo/work/nabors/genomes/10X_Genomics/GEX/refdata-gex-GRCh38-2020-A ", "Mouse": " --transcriptome=/igo/work/nabors/genomes/10X_Genomics/GEX/refdata-gex-mm10-2020-A " } }, "vdj": { - "tool": " /igo/work/nabors/tools/cellranger-7.0.0/cellranger vdj ", + "tool": " /igo/work/tools/cellranger-8.0.1/cellranger vdj ", "genome": { "Human": " --reference=/igo/work/genomes/10X_Genomics/VDJ/refdata-cellranger-vdj-GRCh38-alts-ensembl-7.0.0 ", "Mouse": " --reference=/igo/work/genomes/10X_Genomics/VDJ/refdata-cellranger-vdj-GRCm38-alts-ensembl-7.0.0 " } }, "multi": { - "tool": " /igo/work/nabors/tools/cellranger-7.0.0/cellranger multi " + "tool": " /igo/work/tools/cellranger-8.0.1/cellranger multi " } }