diff --git a/test/SampleSheet_DLP.csv b/test/SampleSheet_DLP.csv index 987b100..a811a3f 100644 --- a/test/SampleSheet_DLP.csv +++ b/test/SampleSheet_DLP.csv @@ -1,20 +1,20 @@ -[Header],,,,,,,, -IEMFileVersion,4,,,,,,, -Date,11/30/2021,,,,,,, -Workflow,GenerateFASTQ,,,,,,, -Application,MICHELLE,,,,,,, -Assay,,,,,,,, -Description,,,,,,,, -Chemistry,Default,,,,,,, -,,,,,,,, -[Reads],,,,,,,, -151,,,,,,,, -151,,,,,,,, -,,,,,,,, -[Settings],,,,,,,, -BarcodeMismatchesIndex1,0,,,,,,, -BarcodeMismatchesIndex2,0,,,,,,, -[Data],,,,,,,, -Lane,Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,index2,Sample_Project,Description -1,DLPNegativeCONTROL_12345A_3_3_IGO_DLPNegativeCONTROL-2710,Mouse,DLP,DLPi7_03-i5_03,AAGGACAT,AACCCCGT,Project_12345,someone@mskcc.org +[Header],,,,,,,, +IEMFileVersion,4,,,,,,, +Date,11/30/21,,,,,,, +Workflow,GenerateFASTQ,,,,,,, +Application,MICHELLE,,,,,,, +Assay,,,,,,,, +Description,,,,,,,, +Chemistry,Default,,,,,,, +,,,,,,,, +[Reads],,,,,,,, +151,,,,,,,, +151,,,,,,,, +,,,,,,,, +[Settings],,,,,,,, +BarcodeMismatchesIndex1,0,,,,,,, +BarcodeMismatchesIndex2,0,,,,,,, +[Data],,,,,,,, +Lane,Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,index2,Sample_Project,Description +1,DLPNegativeCONTROL_12345A_3_3_IGO_DLPNegativeCONTROL-2710,Mouse,SC_DLP,DLPi7_03-i5_03,AAGGACAT,AACCCCGT,Project_12345,someone@mskcc.org 1,IM-1613_RU1697a_IGO_12437_AD_11,Mouse,10X_Genomics,SI-GA-G9,SI-GA-G9,SI-GA-G9,Project_12437_AD,peerd@mskcc.org \ No newline at end of file diff --git a/test_scripts.py b/test_scripts.py index 8feba1f..1152ff1 100644 --- a/test_scripts.py +++ b/test_scripts.py @@ -30,7 +30,7 @@ def testCellranger_generate_cellranger_cmd(): def testCellranger_get_tag(): assert(cellranger.get_tag("10X_genomic") == "Skip") - assert(cellranger.get_tag("10X_Genomics_GeneExpression-3") == "count") + assert(cellranger.get_tag("SC_Chromium-GEX-3") == "count") def testCellranger_get_sequencer_runID(): fastq_path = "/igo/staging/FASTQ/DIANA_0453_AHFKJ5DRXY/Project_06265_AG/Sample_06265_8869_1_IGO_06265_AG_3"