added MSK-ACCESS_v2, same baits, new ratios

mskcc · Oct 26, 2023 · fb262fd · fb262fd
1 parent 8750849
commit fb262fd
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/scripts/run_param_config.py b/scripts/run_param_config.py
@@ -552,6 +552,13 @@ def get_ordered_dic(unordered_dic):
 				MD: "yes",
 				HAPLOTYPE_MAP: "/home/igo/fingerprint_maps/map_files/hg38_no_chr_ACCESS_unordered.map"
 		},
+		"MSK-ACCESS_v2": {
+				BAITS: "/igo/home/igo/resources/ilist/hg38/MSK-ACCESS-v2/MSK-ACCESS-v2_0-probesAllwFP.baits",
+				TARGETS: "/igo/home/igo/resources/ilist/hg38/MSK-ACCESS-v2/MSK-ACCESS-v2_0-probesAllwFP.targets",
+				MSKQ: "no",
+				MD: "yes",
+				HAPLOTYPE_MAP: "/home/igo/fingerprint_maps/map_files/hg38_no_chr_ACCESS_unordered.map"
+		},
 		"PanCancerV2": {
 				BAITS: "/home/igo/resources/BED-Targets/PanCancerV2/PanCancerV2_BAITS.iList",
 				TARGETS: "/home/igo/resources/BED-Targets/PanCancerV2/PanCancerV2_TARGETS.iList",