From aa3d3cb41c8707f0364e50575d86e80ee4810555 Mon Sep 17 00:00:00 2001 From: Nikhil Kumar Date: Mon, 11 Nov 2024 14:41:22 -0500 Subject: [PATCH] Updated juno resource file --- conf/juno_resources.config | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/conf/juno_resources.config b/conf/juno_resources.config index f5462a4..ec44b6a 100644 --- a/conf/juno_resources.config +++ b/conf/juno_resources.config @@ -3,7 +3,7 @@ genome_resources { 'GRCh37' { fasta = '/compute/juno/bic/ROOT/work/ci/resources/genomes/GRCh37/fasta/b37.fasta' dbsnp = '/compute/juno/bic/ROOT/work/ci/resources/genomes/GRCh37/dbsnp/129/dbsnp_138.b37.excluding_sites_after_129.vcf' - facets_snps = '/compute/juno/bic/ROOT/work/ci/resources/genomes/GRCh37/facets_snps/dbsnp_137.b37__RmDupsClean__plusPseudo50__DROP_SORT.vcf' + facets_snps = '/compute/juno/cmo/cse/nikhil/resource/dbsnp_138.b37.vcf.gz' delly = '/compute/juno/bic/ROOT/work/ci/resources/genomes/GRCh37/delly/human.hg19.excl.tsv' cosmic = '/compute/juno/bic/ROOT/work/ci/resources/genomes/GRCh37/cosmic/67/CosmicCodingMuts_v67_b37_20131024__NDS.vcf' intervals = ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', 'X', 'Y', 'MT'] @@ -13,6 +13,9 @@ genome_resources { resources { hotspot = '/compute/juno/bic/ROOT/work/ci/resources/qc_resources/hotspot-list-union-v1-v2.vcf' exac_filter = '/compute/juno/bic/ROOT/work/ci/resources/vep/cache/ExAC_nonTCGA.r0.3.1.sites.vep.vcf.gz' + hapmap = '/compute/juno/bic/ROOT/work/ci/resources/request_files/hapmap/hapmap_3.3.b37.vcf' + indels_1000g = '/compute/juno/bic/ROOT/work/ci/resources/request_files/indels_1000g/Mills_and_1000G_gold_standard.indels.b37.vcf' + snps_1000g = '/compute/juno/bic/ROOT/work/ci/resources/request_files/snps_1000g/1000G_phase1.snps.high_confidence.b37.vcf' } assay_coverage = [