Add test samplesheet

mskcc · Nov 11, 2024 · b27e04b · b27e04b
1 parent 4a2bc75
commit b27e04b
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,3 +1,3 @@
-sample,fastq_1,fastq_2
-SAMPLE_PAIRED_END,/path/to/fastq/files/AEG588A1_S1_L002_R1_001.fastq.gz,/path/to/fastq/files/AEG588A1_S1_L002_R2_001.fastq.gz
-SAMPLE_SINGLE_END,/path/to/fastq/files/AEG588A4_S4_L003_R1_001.fastq.gz,
+pairId,tumorBam,normalBam,assay,normalType,bedFile
+sample_1,/https://github.com/mskcc-omics-workflows/test-datasets/raw/refs/heads/argos/bams/sample_1_tumor.chr17.rg.md.abra.printreads.bam,https://github.com/mskcc-omics-workflows/test-datasets/raw/refs/heads/argos/bams/sample_1_normal.chr17.rg.md.abra.printreads.bam,IMPACT505,MATCHED,https://raw.githubusercontent.com/mskcc-omics-workflows/test-datasets/refs/heads/argos/beds/sample_1_tumor.sample_1_normal.chr17.fci.bed
+sample_2,https://github.com/mskcc-omics-workflows/test-datasets/raw/refs/heads/argos/bams/sample_2_tumor.chr17.rg.md.abra.printreads.bam,https://github.com/mskcc-omics-workflows/test-datasets/raw/refs/heads/argos/bams/sample_2_normal.chr17.rg.md.abra.printreads.bam,IMPACT505,MATCHED,https://raw.githubusercontent.com/mskcc-omics-workflows/test-datasets/refs/heads/argos/beds/sample_2_tumor.sample_2_normal.chr17.fci.bed