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sampleQC_wf:SampleRunMultiQC won't run for WGS because no CollectHsMetrics is run. #974

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gongyixiao opened this issue Sep 29, 2022 · 0 comments · Fixed by #979
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sampleQC_wf:SampleRunMultiQC won't run for WGS because no CollectHsMetrics is run. #974

gongyixiao opened this issue Sep 29, 2022 · 0 comments · Fixed by #979
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bug Something isn't working
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@gongyixiao
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tempo/modules/subworkflow/sampleQC_wf.nf

Line 52 in 7f58fbb

.join(collectHsMetricsOutput, by:0)

tempo/modules/subworkflow/sampleQC_wf.nf

Line 60 in 7f58fbb

collectHsMetricsOutput = collectHsMetricsOutput

These lines have to be adjusted for WGS runs.
@gongyixiao gongyixiao added the bug Something isn't working label Sep 29, 2022
@gongyixiao gongyixiao added this to the 2.0 milestone Sep 29, 2022
@anoronh4 anoronh4 mentioned this issue Dec 22, 2022
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@anoronh4 anoronh4 linked a pull request Dec 22, 2022 that will close this issue
Bugfix/workflow logic issues #979
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Bugfix/workflow logic issues mskcc/tempo
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