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khadi_dev#69

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kevinmhadi wants to merge 23 commits intomskilab-org:mastermskilab-org/JaBbA:masterfrom kevinmhadi:khadi_devkevinmhadi/JaBbA:khadi_devCopy head branch name to clipboard

+12,142-784

Commits

Commits on Nov 24, 2021

• minor changes to allow reading in bedpe junctions

  kevinmhadi

  committed
  a4530e2

• allowing 3.5.0 R version in DESCRIPTION

  kevinmhadi

  committed
  ba8a32b

• changed back cols variable under bedpe processing in read.junctions

  kevinmhadi

  committed
  ac5ec97

Commits on Jan 11, 2022

• fixed up some inst/extdata/jba args & altered read.junctions to read in bedpe + gridss & noticed speed issue with building karyograph in a R3.5.1 build - added GenomicRanges:: to calls to order() i…

  Show description for c4aeda3
  kevinmhadi

  committed
  c4aeda3

Commits on Jan 12, 2022

• exposing max.threads in R script inst/extdata/jba & opened up customparams in ramip_stub & modded to Rcplex2 so that CPLEX environment is closed at the end of MIP run - so that custom CPLEX params …

  Show description for 457d99c
  kevinmhadi

  committed
  457d99c

• specified GenomicRanges::order in JaBbA:::JaBbA.alleles because of slow performance in R-3.5.1

  kevinmhadi

  committed
  05ab0a6

Commits on Jan 15, 2022

• exposed workmem cplex parameter to allow greater ram usage (default is 2048 MB)

  kevinmhadi

  committed
  2981d92

Commits on Jan 27, 2022

• merges

  kevinmhadi

  committed
  20350b6

Commits on Jan 28, 2022

• merge mistake

  kevinmhadi

  committed
  f7f0725

• merge mistake2

  kevinmhadi

  committed
  926fe04

• ok

  kevinmhadi

  committed
  0921999

• read.junctions update

  kevinmhadi

  committed
  721ac7b

• other changes

  kevinmhadi

  committed
  0b96b7c

• fixes

  kevinmhadi

  committed
  fd48de4

• more

  kevinmhadi

  committed
  7cc466f

Commits on Feb 3, 2022

• minor changes

  kevinmhadi

  committed
  5cec0f5

Commits on Aug 10, 2022

• changes

  kevinmhadi

  committed
  e94e46e

• Merge branch 'khadi_dev' of github.com:kevinmhadi/JaBbA into khadi_dev

  kevinmhadi

  committed
  e9bb903

• update

  kevinmhadi

  committed
  d978be6

• Merge branch 'master' into khadi_dev

  Show description for 42e11a5
  kevinmhadi

  committed
  42e11a5

• zc dev equiv

  kevinmhadi

  committed
  16a1531

• merged in ZC dev version

  kevinmhadi

  committed
  a700bcc

Commits on Aug 11, 2022

• cplex_customparams change

  kevinmhadi

  committed
  11a0129