Update README.md

GC and Mappability files were out of date. Adds new versions of these files on AWS s3.
mskilab-org · Dec 19, 2023 · 2d5ab27 · 2d5ab27
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commit 2d5ab27
Showing 1 changed file with 10 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -131,13 +131,19 @@ GC and Mappability files for 1 kb WGS (hg19)
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 These can be used as inputs to fragCounter to correct GC and Mappability biases. Make sure to save them in same directory and supplying the path to the directory. Retain the name of the file.
 
-GC file: http://mskilab.com/dryclean/hg19/gc1000.rds
+GC file: [https://mskilab.s3.amazonaws.com/hg19/GCMAP/gcmap.19/gc1000.rds](https://mskilab.s3.amazonaws.com/hg19/GCMAP/gcmap.19/gc1000.rds)
+Mappability file: [https://mskilab.s3.amazonaws.com/hg19/GCMAP/gcmap.19/map1000.rds](https://mskilab.s3.amazonaws.com/hg19/GCMAP/gcmap.19/map1000.rds)
 
 
-Mappability file: http://mskilab.com/dryclean/hg19/map1000.rds
+GC and Mappability files for hg38 WGS (200bp)                                                                                                                                                                                                                                                                                                     
+------------
 
+GC file: [https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/gc200.rds](https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/gc200.rds)
+Mappability file: [https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/map200.rds](https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/map200.rds)
 
-GC and Mappability files for hg38 WGS (200bp)                                                                                                                                                                                                                                                                                                     
+GC and Mappability files for hg38 WGS (1000bp)                                                                                                                                                                                                                                                                                                     
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-[gcmap.hg38.200bp.tar.gz](https://github.com/ShaiberAlon/fragCounter/raw/master/inst/extdata/gcmap.hg38.200bp.tar.gz)
+GC file: [https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/gc1000.rds](https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/gc1000.rds)
+Mappability file: [https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/map1000.rds](https://mskilab.s3.amazonaws.com/hg38/GCMAP/gcmap.38/map1000.rds)
+