minmapq is ignored

[tlesluyes]

Hi. It seems like the minmapq argument is currently useless because it is ignored in the PrepareCov function where min.mapq = 1 is hardcoded.

[mskilab]

Thanks - good catch, will correct this

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On Mon, Jan 6, 2020 at 9:44 AM tlesluyes ***@***.***> wrote: Hi. It seems like the minmapq argument is currently useless because it is ignored in the PrepareCov function where min.mapq = 1 is hardcoded. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AC73JEO4FMSLWSS4ZW2FGTDQ4M7TFANCNFSM4KDFIWIQ> .