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Correcting coverage for both hg19 and GRCh37 #5

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kcygan opened this issue Feb 11, 2020 · 0 comments
Open

Correcting coverage for both hg19 and GRCh37 #5

kcygan opened this issue Feb 11, 2020 · 0 comments

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@kcygan
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kcygan commented Feb 11, 2020

Just a suggestion. For people who mapped reads to hg19 (i.e. "chr" included in seqnames), it would be sufficient to add one line:
cov = gr.sub(cov)

right after line 627
https://github.com/mskilab/fragCounter/blob/575af9926e5177a39b45a31ad37048953a680ca4/R/fragCounter.R#L627
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