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FragCounter not reading from cov.rds files #8

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oriolpich opened this issue Feb 4, 2021 · 0 comments
Open

FragCounter not reading from cov.rds files #8

oriolpich opened this issue Feb 4, 2021 · 0 comments

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@oriolpich
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Hi,

it seems that cov is hardcoded to NULL in PrepareCov within the FragCounter function:

cov = PrepareCov(bam, cov = NULL, ...)
in lines 298 and 303.

According to my test, this causes the function to yield an error if a coverage.rds is provided. I managed to run the function by removing the NULL.

cov = PrepareCov(bam, cov = cov, ...)

Hope this helps!
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@oriolpich