From 761dfb63d4ae333d02f5b5484f8dfe4403f15bdb Mon Sep 17 00:00:00 2001
From: SplitInf <Bann13@gmail.com>
Date: Tue, 24 May 2022 23:56:00 -0400
Subject: [PATCH] Update converters.R

add break condition when reached the end of bedpe file
---
 R/converters.R | 1 +
 1 file changed, 1 insertion(+)

diff --git a/R/converters.R b/R/converters.R
index f406049b..89587950 100755
--- a/R/converters.R
+++ b/R/converters.R
@@ -937,6 +937,7 @@ read.juncs = function(rafile,
             while (grepl("^((#)|(chrom)|(chr))", thisline)) {
                 headers = c(headers, thisline)
                 thisline = readLines(f, 1)
+                if(length(thisline)==0) break
             }
             ln = sum(length(headers), length(thisline))
             while (length(thisline) > 0) {