diff --git a/conf/igenomes.config b/conf/igenomes.config index e7edfd6..2c3996a 100644 --- a/conf/igenomes.config +++ b/conf/igenomes.config @@ -88,7 +88,7 @@ params { build_dryclean = 'hg38' hapmap_sites = "${params.igenomes_base}/Homo_sapiens/GATK/GRCh38/Annotation/GATKBundle/hapmap_3.3.hg38.vcf.gz" pon_dryclean = "${params.mski_base}/dryclean/pon/hg38/detergent.rds" - blacklist_coverage_jabba = "${params.mski_base}/JaBbA/blacklist_coverage/hg38/hg38.coverage.mask.rds" + blacklist_coverage_jabba = "${params.mski_base}/JaBbA/blacklist_coverage/hg38/hg38.coverage.mask.nochr.rds" } 'GRCh37' { diff --git a/modules/local/jabba/main.nf b/modules/local/jabba/main.nf index aca45da..b274c98 100644 --- a/modules/local/jabba/main.nf +++ b/modules/local/jabba/main.nf @@ -3,8 +3,8 @@ process JABBA { label 'process_high' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://mskilab/jabba_cplex:latest': - 'mskilab/jabba_cplex:latest' }" + 'docker://mskilab/jabba:latest': + 'mskilab/jabba:latest' }" input: tuple val(meta), path(cov_rds) @@ -177,8 +177,8 @@ process COERCE_SEQNAMES { label 'process_low' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://mskilab/jabba_cplex:latest': - 'mskilab/jabba_cplex:latest' }" + 'docker://mskilab/jabba:latest': + 'mskilab/jabba:latest' }" input: tuple val(meta), path(file)