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I tried a test run with the following command, purposely want to have jabba singularity images downloaded. but hit an error message, please advise:
$ module list
Currently Loaded Modules:
openjdk/17.0.3+7 2) nextflow/23.10.0
$ nextflow run mskilab-org/nf-jabba -profile test,singularity --outdir
Nextflow 24.10.0 is available - Please consider updating your version to it
N E X T F L O W ~ version 23.10.0
...
WARN: Access to undefined parameter germline_resource -- Initialise it to a default value eg. params.germline_resource = some_value
...
WARN: Access to undefined parameter validationS3PathCheck -- Initialise it to a default value eg. params.validationS3PathCheck = some_value
ERROR ~ ERROR: Validation of '/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv' file failed!
-- Check '.nextflow.log' file for details
The following errors have been detected:
-- Entry 1: Missing required value: patient
-- Entry 2: Missing required value: patient
-- Entry 3: Missing required value: patient
-- Entry 4: Missing required value: patient
Thank you for your help.
Rong Yao
The text was updated successfully, but these errors were encountered:
Dear authors,
I tried a test run with the following command, purposely want to have jabba singularity images downloaded. but hit an error message, please advise:
$ module list
Currently Loaded Modules:
$ nextflow run mskilab-org/nf-jabba -profile test,singularity --outdir
Nextflow 24.10.0 is available - Please consider updating your version to it
N E X T F L O W ~ version 23.10.0
...
WARN: Access to undefined parameter
germline_resource
-- Initialise it to a default value eg.params.germline_resource = some_value
...
WARN: Access to undefined parameter
validationS3PathCheck
-- Initialise it to a default value eg.params.validationS3PathCheck = some_value
ERROR ~ ERROR: Validation of '/nf-core/test-datasets/viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv' file failed!
-- Check '.nextflow.log' file for details
The following errors have been detected:
Thank you for your help.
Rong Yao
The text was updated successfully, but these errors were encountered: