From 32495d078b3cb4fff64ee0662f6ef8792a9445f8 Mon Sep 17 00:00:00 2001 From: Carlos Hernandez Date: Thu, 30 Mar 2017 01:20:43 -0700 Subject: [PATCH 1/2] fix badges --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index af2f291..733d233 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,12 @@ MSMExplorer: data visualizations for biomolecular dynamics ========================================================== -[![Build Status](https://travis-ci.org/msmexplorer/msmexplorer.svg?branch=master)] (https://travis-ci.org/msmexplorer/msmexplorer) +[![Build Status](https://travis-ci.org/msmexplorer/msmexplorer.svg?branch=master)](https://travis-ci.org/msmexplorer/msmexplorer) [![Build status](https://ci.appveyor.com/api/projects/status/038hirce0vlx2847?svg=true)](https://ci.appveyor.com/project/cxhernandez/msmexplorer) [![Coverage Status](https://coveralls.io/repos/github/msmexplorer/msmexplorer/badge.svg?branch=master)](https://coveralls.io/github/msmexplorer/msmexplorer?branch=master) [![PyPI version](https://badge.fury.io/py/msmexplorer.svg)](http://badge.fury.io/py/msmexplorer) -[![License](https://img.shields.io/badge/license-MIT-red.svg?style=flat)] (https://opensource.org/licenses/MIT) -[![Documentation](https://img.shields.io/badge/docs-latest-blue.svg?style=flat)] (http://msmbuilder.org/msmexplorer/) +[![License](https://img.shields.io/badge/license-MIT-red.svg?style=flat)](https://opensource.org/licenses/MIT) +[![Documentation](https://img.shields.io/badge/docs-latest-blue.svg?style=flat)](http://msmbuilder.org/msmexplorer/) [![DOI](https://zenodo.org/badge/47228682.svg)](https://zenodo.org/badge/latestdoi/47228682) From 8b62010143ad33e6049dcb44a952439ed479804e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Carlos=20Hern=C3=A1ndez?= Date: Thu, 30 Mar 2017 13:54:55 -0700 Subject: [PATCH 2/2] add Gao, Zhao paper --- docs/papers.rst | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/docs/papers.rst b/docs/papers.rst index c26244e..d5e2aa7 100644 --- a/docs/papers.rst +++ b/docs/papers.rst @@ -6,3 +6,22 @@ Publications Using MSMExplorer Below is an ever-growing list of publications that use MSMExplorer plots. If you've used MSMExplorer in your paper, feel free to add it here via pull request! + + +A Network of Conformational Transitions in the Apo Form of NDM-1 Enzyme Revealed by MD Simulation and a Markov State Model +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +.. image:: http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jpcbfk/0/jpcbfk.ahead-of-print/acs.jpcb.7b00062/20170329/images/medium/jp-2017-00062b_0008.gif + +.. code:: bibtex + + @article{Gao2017, + doi = {10.1021/acs.jpcb.7b00062}, + url = {https://doi.org/10.1021%2Facs.jpcb.7b00062}, + year = {2017}, + month = {mar}, + publisher = {American Chemical Society ({ACS})}, + author = {Kaifu Gao and Yunjie Zhao}, + title = {A Network of Conformational Transitions in the Apo Form of {NDM}-1 Enzyme Revealed by {MD} Simulation and a Markov State Model}, + journal = {The Journal of Physical Chemistry B} + }