test r

mspodda · May 27, 2024 · 0432542 · 0432542
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commit 0432542
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Showing 2 changed files with 2 additions and 11 deletions.
diff --git a/workflow/R/R_salmon.R b/workflow/R/R_salmon.R
@@ -239,12 +239,4 @@ plot_total <- ggplot(combined_df,aes(x=groups, y=log2(as.numeric(BRAF)+0.01), fi
 setwd(final_output)
 pdf("total_salmon.pdf", width = 23.5, height = 13)
 plot_total
-dev.off() 
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+dev.off()
diff --git a/workflow/R/config_all.R b/workflow/R/config_all.R
@@ -21,8 +21,7 @@ BRAF_ids <- c("ENST00000288602.11","ENST00000469930.2","ENST00000479537.6","ENST
 
 ## libraries
 my_packages <- c("dplyr","ggplot2","tidyr","ggsignif","ggpubr","patchwork","stringr",
-                 "ggrepel","bedtoolsr","tibble","GenomicAlignments","tximeta",
-                 "tximport")
+                 "ggrepel","bedtoolsr","tibble","GenomicAlignments", "tximport")
 
 ## Sample typologies
 samples_typologies <-  c("lung_geo")