add samples

mspodda · May 17, 2024 · 4fdece4 · 4fdece4
1 parent f9bed52
commit 4fdece4
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Showing 3 changed files with 5 additions and 1 deletion.
diff --git a/config/config_final.yml b/config/config_final.yml
@@ -46,7 +46,7 @@ reference:
 
 # directory structure for input and output files
 datadirs:
-  samples: $sampledir/Lung_1_20.txt
+  samples: $sampledir/lung_geo.txt  ### your samples here! 
   benchmarks: $sourcedir/benchmarks
   stringtie: $sourcedir/stringtie
   ballgown: $sourcedir/ballgown

diff --git a/test_data/Quant_seq_lung.txt b/test_data/Quant_seq_lung.txt
@@ -0,0 +1 @@
+SRR14510134
diff --git a/test_data/lung_geo.txt b/test_data/lung_geo.txt
@@ -0,0 +1,3 @@
+SRR10440860
+SRR10440861
+SRR10440862