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mspodda committed May 22, 2024
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3 changes: 3 additions & 0 deletions .github/workflows/testing.yml
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Expand Up @@ -27,6 +27,9 @@ jobs:
run: |
mamba install -c conda-forge -c bioconda snakemake
- run: echo "Finish installing snakemake"
- name: unzip the files
run: |
gzip -d test_data/chr7.fa.gz
- name: Run snakemake
run: snakemake -s workflow/snakefile_final.smk --use-conda --rerun-incomplete --core 2 -k

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