diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml index bfdf66b..6ea3fec 100644 --- a/.github/workflows/testing.yml +++ b/.github/workflows/testing.yml @@ -27,6 +27,9 @@ jobs: run: | mamba install -c conda-forge -c bioconda snakemake - run: echo "Finish installing snakemake" + - name: unzip the files + run: | + gzip -d test_data/chr7.fa.gz - name: Run snakemake run: snakemake -s workflow/snakefile_final.smk --use-conda --rerun-incomplete --core 2 -k