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mspodda committed May 22, 2024
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2 changes: 1 addition & 1 deletion test_data/gene.fa

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3 changes: 2 additions & 1 deletion workflow/util/script.sh
Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
cd ../../results/fastq/$1
ls
cd results/fastq/$1
ffq --ftp $1 | grep -Eo '"url": "[^"]*"' | grep -o ftp.sra.*$ | sed 's/.$//' | xargs wget -q -c

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