Input preparation for vcontact2

[MonicaSteffi]

Dear Author,
Thank you for the tool. In Cenote-take2, there is an option to prepare input files for vcontact2 including vcontact2_gene_to_genome1.csv and vcontact2_all_proteins.faa . Is there any way we can do it from Cenote-take3 output?

[mtisza1]

Hi Monica,

I could help you generate that file, but first I want to make you aware of VContact3 (https://bitbucket.org/MAVERICLab/vcontact3/src/master/)

It's an update from VContact2 and it only requires the multi-fasta file of your virus genomes.

If you still need to use VContact2, let me know.

Mike