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get_files.sh
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#!/bin/bash
case "$1" in
0)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/0_analyze_pdb.ipynb -o 0_analyze_pdb.ipynb
;;
1)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/1_1_prepare_system.ipynb -o 1_1_prepare_system.ipynb
;;
2)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/2_min_equil.ipynb -o 2_min_equil.ipynb
;;
3)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/3_benchmarking.ipynb -o 3_benchmarking.ipynb
;;
4)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/4_production_run.ipynb -o 4_production_run.ipynb
;;
5)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/5_trj_preprocessing.ipynb -o 5_trj_preprocessing.ipynb
;;
6)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/6_1_basic_analysis.ipynb -o 6_1_basic_analysis.ipynb
;;
60)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/6_0_quality_control.ipynb -o 6_0_quality_control.ipynb
;;
c)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/config.py -o config.py
;;
g)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/get_files.sh -o get_files.sh
chmod u+x get_files.sh
;;
s)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/status.ipynb -o status.ipynb
;;
f)
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/funcs.py -o funcs.py
;;
v)
mkdir -p VMD_scripts
cd VMD_scripts
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/VMD_scripts/view_nucl.tcl -o view_nucl.tcl
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/VMD_scripts/movie.tcl -o movie.tcl
cd ..
;;
r)
mkdir -p Run_scripts
cd Run_scripts
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/Run_scripts/lomo2_run.sh -o lomo2_run.sh
curl -s https://bb06d1eb07ea8543d3ce493b455852a7d0b1b7f1@raw.githubusercontent.com/intbio/gmx_template/master/Run_scripts/lomo2_run_cont.sh -o lomo2_run_cont.sh
cd ..
;;
all)
curl -s https://[email protected]/intbio/gmx_template/zip/master -o master.zip
unzip master.zip
;;
esac