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Merge branch 'cherry-pick-e461e011' into 'release-v0.7'
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Merge branch 'slee/release-v0.7.2' into 'release-v0.7'

See merge request machine-learning/dorado!1079
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iiSeymour committed Jun 18, 2024
2 parents 3835272 + 2cb04e0 commit 9ac85c6
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10 changes: 10 additions & 0 deletions CHANGELOG.md
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All notable changes to Dorado will be documented in this file.

# [0.7.2] (18 June 2024)

This release of Dorado resolves basecalling failures when running v5 SUP models on CPU-only devices or v5 RNA HAC on Apple silicon. It also fixes bugs in `dorado demux` and `dorado correct`, and corrects `sm` and `sd` tags to match the Dorado SAM specification.

* 383527291e0553fa08d647af81a6c8a4bf4045a5 - Fix bug causing v5 SUP models to fail when running on CPU-only devices
* c36f4443d982a2ca47dc84fb8b840929811ea087 - Fix bug causing RNA v5 HAC basecalling to fail on Apple silicon
* 36218004593b0ebba37ff870eb3d92c8238fb0c6 - Fix bug causing segfault in `dorado demux`
* 3b51c1b3c694453d7da04ea91030d7e98b4e9681 - Fix sub-par alignments in `dorado correct`
* d0df79c49f29d2f7cdff3423071380be3b6c6918 - Correct shift and scale (`sm` and `sd`) SAM tags to match SAM specification

# [0.7.1] (3 June 2024)

This release of Dorado fixes out of memory errors when using the v5 SUP model with methylation calling, resolves several bugs in `dorado correct` and adds correct handling of the `BC:Z` tag when running `demux` multiple times.
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8 changes: 4 additions & 4 deletions README.md
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First, download the relevant installer for your platform:

- [dorado-0.7.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-x64.tar.gz)
- [dorado-0.7.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-arm64.tar.gz)
- [dorado-0.7.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-osx-arm64.zip)
- [dorado-0.7.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-win64.zip)
- [dorado-0.7.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-x64.tar.gz)
- [dorado-0.7.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-arm64.tar.gz)
- [dorado-0.7.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-osx-arm64.zip)
- [dorado-0.7.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-win64.zip)

Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location.

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2 changes: 1 addition & 1 deletion cmake/DoradoVersion.cmake
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set(DORADO_VERSION_MAJOR 0)
set(DORADO_VERSION_MINOR 7)
set(DORADO_VERSION_REV 1)
set(DORADO_VERSION_REV 2)

find_package(Git QUIET)
if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")
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