From 2cb04e0a9c3f6ce217cfd661856df31447c11f8c Mon Sep 17 00:00:00 2001 From: Christopher Seymour Date: Mon, 17 Jun 2024 22:09:56 +0000 Subject: [PATCH] Merge branch 'slee/release-v0.7.2' into 'master' v0.7.2 release See merge request machine-learning/dorado!1078 (cherry picked from commit e461e011fd960a2d780b45db3ffbdfa58df56828) d64f1a7e v0.7.2 release --- CHANGELOG.md | 10 ++++++++++ README.md | 8 ++++---- cmake/DoradoVersion.cmake | 2 +- 3 files changed, 15 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5361415b9..cd05858b4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,16 @@ All notable changes to Dorado will be documented in this file. +# [0.7.2] (18 June 2024) + +This release of Dorado resolves basecalling failures when running v5 SUP models on CPU-only devices or v5 RNA HAC on Apple silicon. It also fixes bugs in `dorado demux` and `dorado correct`, and corrects `sm` and `sd` tags to match the Dorado SAM specification. + +* 383527291e0553fa08d647af81a6c8a4bf4045a5 - Fix bug causing v5 SUP models to fail when running on CPU-only devices +* c36f4443d982a2ca47dc84fb8b840929811ea087 - Fix bug causing RNA v5 HAC basecalling to fail on Apple silicon +* 36218004593b0ebba37ff870eb3d92c8238fb0c6 - Fix bug causing segfault in `dorado demux` +* 3b51c1b3c694453d7da04ea91030d7e98b4e9681 - Fix sub-par alignments in `dorado correct` +* d0df79c49f29d2f7cdff3423071380be3b6c6918 - Correct shift and scale (`sm` and `sd`) SAM tags to match SAM specification + # [0.7.1] (3 June 2024) This release of Dorado fixes out of memory errors when using the v5 SUP model with methylation calling, resolves several bugs in `dorado correct` and adds correct handling of the `BC:Z` tag when running `demux` multiple times. diff --git a/README.md b/README.md index 526def98b..971993513 100644 --- a/README.md +++ b/README.md @@ -22,10 +22,10 @@ If you encounter any problems building or running Dorado, please [report an issu First, download the relevant installer for your platform: - - [dorado-0.7.1-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-x64.tar.gz) - - [dorado-0.7.1-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-linux-arm64.tar.gz) - - [dorado-0.7.1-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-osx-arm64.zip) - - [dorado-0.7.1-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.1-win64.zip) + - [dorado-0.7.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-x64.tar.gz) + - [dorado-0.7.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-linux-arm64.tar.gz) + - [dorado-0.7.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-osx-arm64.zip) + - [dorado-0.7.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.7.2-win64.zip) Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location. diff --git a/cmake/DoradoVersion.cmake b/cmake/DoradoVersion.cmake index efdd11d88..543793d86 100644 --- a/cmake/DoradoVersion.cmake +++ b/cmake/DoradoVersion.cmake @@ -1,6 +1,6 @@ set(DORADO_VERSION_MAJOR 0) set(DORADO_VERSION_MINOR 7) -set(DORADO_VERSION_REV 1) +set(DORADO_VERSION_REV 2) find_package(Git QUIET) if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")