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overplot-type doesn't work #450

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uribertocchi opened this issue Jan 16, 2024 · 1 comment
Open

overplot-type doesn't work #450

uribertocchi opened this issue Jan 16, 2024 · 1 comment

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@uribertocchi
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Hi all.
I'm trying to produce a plot with density curves for a sample and control.
When using the following command, the output is the default raw reads plot. Any idea what am I missing here?

The command:
tombo plot genome_locations --genome-locations "${CHR}:${START}" "${CHR}:${END}"
--fast5-basedirs $FAST5_DIR
--control-fast5-basedirs $CONTROL_DIR
--plot-standard-model
--pdf-filename "${PLOT_DIR}/${CHR}${START}${END}.pdf"
--overplot-type Density

@marcus1487
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Tombo is no longer supported. I would recommend moving to Remora for these types of plots.

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