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Error in `cfl3d_seq': corrupted size vs. prev_size #12

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wkholy opened this issue Mar 15, 2018 · 0 comments
Open

Error in `cfl3d_seq': corrupted size vs. prev_size #12

wkholy opened this issue Mar 15, 2018 · 0 comments

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@wkholy
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wkholy commented Mar 15, 2018

I tried to run a new case in Ubuntu 16.04, with
gcc version 4.7.4 (Ubuntu/Linaro 4.7.4-3ubuntu12) .

It received an error using either cfl3d_seq or cfl3d_mpi.
Detailed message is below:

*** Error in `cfl3d_seq': corrupted size vs. prev_size: 0x00000000029bebe0 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7fba29ef27e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x80dfb)[0x7fba29efbdfb]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7fba29eff53c]
cfl3d_seq[0x572fb5]
cfl3d_seq[0x6d7818]
cfl3d_seq[0x40354d]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7fba29e9b830]
cfl3d_seq[0x403579]
======= Memory map: ========
00400000-00921000 r-xp 00000000 fc:01 68421499 /home/wkholy/app/CFL3D/build/cfl/seq/cfl3d_seq
00b21000-00b22000 r--p 00521000 fc:01 68421499 /home/wkholy/app/CFL3D/build/cfl/seq/cfl3d_seq
00b22000-00b24000 rw-p 00522000 fc:01 68421499 /home/wkholy/app/CFL3D/build/cfl/seq/cfl3d_seq
00b24000-00cc1000 rw-p 00000000 00:00 0
0295a000-02b08000 rw-p 00000000 00:00 0 [heap]
7fba20000000-7fba20021000 rw-p 00000000 00:00 0
7fba20021000-7fba24000000 ---p 00000000 00:00 0
7fba27f78000-7fba28937000 r--p 00000000 fc:00 100740665 /usr/lib/locale/locale-archive
7fba28937000-7fba28939000 r-xp 00000000 fc:00 100675113 /lib/x86_64-linux-gnu/libutil-2.23.so
7fba28939000-7fba28b38000 ---p 00002000 fc:00 100675113 /lib/x86_64-linux-gnu/libutil-2.23.so
7fba28b38000-7fba28b39000 r--p 00001000 fc:00 100675113 /lib/x86_64-linux-gnu/libutil-2.23.so
7fba28b39000-7fba28b3a000 rw-p 00002000 fc:00 100675113 /lib/x86_64-linux-gnu/libutil-2.23.so
7fba28b3a000-7fba28b41000 r-xp 00000000 fc:00 100675124 /lib/x86_64-linux-gnu/librt-2.23.so
7fba28b41000-7fba28d40000 ---p 00007000 fc:00 100675124 /lib/x86_64-linux-gnu/librt-2.23.so
7fba28d40000-7fba28d41000 r--p 00006000 fc:00 100675124 /lib/x86_64-linux-gnu/librt-2.23.so
7fba28d41000-7fba28d42000 rw-p 00007000 fc:00 100675124 /lib/x86_64-linux-gnu/librt-2.23.so
7fba28d42000-7fba28e3a000 r-xp 00000000 fc:01 102501661 /home/wkholy/app/libs/openmpi/lib/libopen-pal.so.40.1.0
7fba28e3a000-7fba2903a000 ---p 000f8000 fc:01 102501661 /home/wkholy/app/libs/openmpi/lib/libopen-pal.so.40.1.0
7fba2903a000-7fba2903d000 r--p 000f8000 fc:01 102501661 /home/wkholy/app/libs/openmpi/lib/libopen-pal.so.40.1.0
7fba2903d000-7fba29043000 rw-p 000fb000 fc:01 102501661 /home/wkholy/app/libs/openmpi/lib/libopen-pal.so.40.1.0
7fba29043000-7fba2904a000 rw-p 00000000 00:00 0
7fba2904a000-7fba290f7000 r-xp 00000000 fc:01 102573838 /home/wkholy/app/libs/openmpi/lib/libopen-rte.so.40.0.1
7fba290f7000-7fba292f6000 ---p 000ad000 fc:01 102573838 /home/wkholy/app/libs/openmpi/lib/libopen-rte.so.40.0.1
7fba292f6000-7fba292f8000 r--p 000ac000 fc:01 102573838 /home/wkholy/app/libs/openmpi/lib/libopen-rte.so.40.0.1
7fba292f8000-7fba292fc000 rw-p 000ae000 fc:01 102573838 /home/wkholy/app/libs/openmpi/lib/libopen-rte.so.40.0.1
7fba292fc000-7fba292fe000 rw-p 00000000 00:00 0
7fba292fe000-7fba2933c000 r-xp 00000000 fc:00 34011469 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0
7fba2933c000-7fba2953b000 ---p 0003e000 fc:00 34011469 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0
7fba2953b000-7fba2953c000 r--p 0003d000 fc:00 34011469 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0
7fba2953c000-7fba2953d000 rw-p 0003e000 fc:00 34011469 /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0
7fba2953d000-7fba29555000 r-xp 00000000 fc:00 100675105 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fba29555000-7fba29754000 ---p 00018000 fc:00 100675105 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fba29754000-7fba29755000 r--p 00017000 fc:00 100675105 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fba29755000-7fba29756000 rw-p 00018000 fc:00 100675105 /lib/x86_64-linux-gnu/libpthread-2.23.so
7fba29756000-7fba2975a000 rw-p 00000000 00:00 0
7fba2975a000-7fba2983b000 r-xp 00000000 fc:01 102574042 /home/wkholy/app/libs/openmpi/lib/libmpi.so.40.0.1
7fba2983b000-7fba29a3a000 ---p 000e1000 fc:01 102574042 /home/wkholy/app/libs/openmpi/lib/libmpi.so.40.0.1
7fba29a3a000-7fba29a3b000 r--p 000e0000 fc:01 102574042 /home/wkholy/app/libs/openmpi/lib/libmpi.so.40.0.1
7fba29a3b000-7fba29a4c000 rw-p 000e1000 fc:01 102574042 /home/wkholy/app/libs/openmpi/lib/libmpi.so.40.0.1
7fba29a4c000-7fba29a5d000 rw-p 00000000 00:00 0
7fba29a5d000-7fba29a60000 r-xp 00000000 fc:00 100675108 /lib/x86_64-linux-gnu/libdl-2.23.so
7fba29a60000-7fba29c5f000 ---p 00003000 fc:00 100675108 /lib/x86_64-linux-gnu/libdl-2.23.so
7fba29c5f000-7fba29c60000 r--p 00002000 fc:00 100675108 /lib/x86_64-linux-gnu/libdl-2.23.so
7fba29c60000-7fba29c61000 rw-p 00003000 fc:00 100675108 /lib/x86_64-linux-gnu/libdl-2.23.so
7fba29c61000-7fba29c7a000 r-xp 00000000 fc:01 103964869 /home/wkholy/Downloads/zlib-1.2.8/libz.so.1.2.8
7fba29c7a000-7fba29e79000 ---p 00019000 fc:01 103964869 /home/wkholy/Downloads/zlib-1.2.8/libz.so.1.2.8
7fba29e79000-7fba29e7a000 r--p 00018000 fc:01 103964869 /home/wkholy/Downloads/zlib-1.2.8/libz.so.1.2.8
7fba29e7a000-7fba29e7b000 rw-p 00019000 fc:01 103964869 /home/wkholy/Downloads/zlib-1.2.8/libz.so.1.2.8
7fba29e7b000-7fba2a03b000 r-xp 00000000 fc:00 100675106 /lib/x86_64-linux-gnu/libc-2.23.so
7fba2a03b000-7fba2a23b000 ---p 001c0000 fc:00 100675106 /lib/x86_64-linux-gnu/libc-2.23.so
7fba2a23b000-7fba2a23f000 r--p 001c0000 fc:00 100675106 /lib/x86_64-linux-gnu/libc-2.23.so
7fba2a23f000-7fba2a241000 rw-p 001c4000 fc:00 100675106 /lib/x86_64-linux-gnu/libc-2.23.so
7fba2a241000-7fba2a245000 rw-p 00000000 00:00 0
7fba2a245000-7fba2a25b000 r-xp 00000000 fc:00 100674123 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fba2a25b000-7fba2a45a000 ---p 00016000 fc:00 100674123 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fba2a45a000-7fba2a45b000 rw-p 00015000 fc:00 100674123 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fba2a45b000-7fba2a563000 r-xp 00000000 fc:00 100675102 /lib/x86_64-linux-gnu/libm-2.23.so
7fba2a563000-7fba2a762000 ---p 00108000 fc:00 100675102 /lib/x86_64-linux-gnu/libm-2.23.so
7fba2a762000-7fba2a763000 r--p 00107000 fc:00 100675102 /lib/x86_64-linux-gnu/libm-2.23.so
7fba2a763000-7fba2a764000 rw-p 00108000 fc:00 100675102 /lib/x86_64-linux-gnu/libm-2.23.so
7fba2a764000-7fba2a88d000 r-xp 00000000 fc:00 33565224 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
7fba2a88d000-7fba2aa8c000 ---p 00129000 fc:00 33565224 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
7fba2aa8c000-7fba2aa8d000 r--p 00128000 fc:00 33565224 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
7fba2aa8d000-7fba2aa8f000 rw-p 00129000 fc:00 33565224 /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
7fba2aa8f000-7fba2ae66000 r-xp 00000000 fc:01 49719144 /home/wkholy/app/libs/hdf5/lib/libhdf5.so.101.0.0
7fba2ae66000-7fba2b065000 ---p 003d7000 fc:01 49719144 /home/wkholy/app/libs/hdf5/lib/libhdf5.so.101.0.0
7fba2b065000-7fba2b06f000 r--p 003d6000 fc:01 49719144 /home/wkholy/app/libs/hdf5/lib/libhdf5.so.101.0.0
7fba2b06f000-7fba2b078000 rw-p 003e0000 fc:01 49719144 /home/wkholy/app/libs/hdf5/lib/libhdf5.so.101.0.0
7fba2b078000-7fba2b07b000 rw-p 00000000 00:00 0
7fba2b07b000-7fba2b141000 r-xp 00000000 fc:01 37424309 /home/wkholy/app/libs/cgns/lib/libcgns.so.3.2
7fba2b141000-7fba2b340000 ---p 000c6000 fc:01 37424309 /home/wkholy/app/libs/cgns/lib/libcgns.so.3.2
7fba2b340000-7fba2b341000 r--p 000c5000 fc:01 37424309 /home/wkholy/app/libs/cgns/lib/libcgns.so.3.2
7fba2b341000-7fba2b344000 rw-p 000c6000 fc:01 37424309 /home/wkholy/app/libs/cgns/lib/libcgns.so.3.2
7fba2b344000-7fba2b361000 rw-p 00000000 00:00 0
7fba2b361000-7fba2b387000 r-xp 00000000 fc:00 100675104 /lib/x86_64-linux-gnu/ld-2.23.so
7fba2b55f000-7fba2b567000 rw-p 00000000 00:00 0
7fba2b583000-7fba2b586000 rw-p 00000000 00:00 0
7fba2b586000-7fba2b587000 r--p 00025000 fc:00 100675104 /lib/x86_64-linux-gnu/ld-2.23.so
7fba2b587000-7fba2b588000 rw-p 00026000 fc:00 100675104 /lib/x86_64-linux-gnu/ld-2.23.so
7fba2b588000-7fba2b589000 rw-p 00000000 00:00 0
7ffc4590d000-7ffc4592f000 rw-p 00000000 00:00 0 [stack]
7ffc459a8000-7ffc459aa000 r--p 00000000 00:00 0 [vvar]
7ffc459aa000-7ffc459ac000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0 0x7FBA2A77FE08
#1 0x7FBA2A77EF90
#2 0x7FBA29EB04AF
#3 0x7FBA29EB0428
#4 0x7FBA29EB2029
#5 0x7FBA29EF27E9
#6 0x7FBA29EFBDFA
#7 0x7FBA29EFF53B
#8 0x572FB4 in cfl3d_
#9 0x6D7817 in MAIN__ at main.F:?
Aborted (core dumped)

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