Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fSNP not tested? #53

Open
plantformatics opened this issue Dec 8, 2021 · 0 comments
Open

fSNP not tested? #53

plantformatics opened this issue Dec 8, 2021 · 0 comments

Comments

@plantformatics
Copy link

I am running RASQUAL on scATAC-seq data from 172 individuals and noticed that the fSNP are never present in the output. No matter how I adjust filters (for both fSNP and rSNP), the SNPs within the ATAC peak are never included in the output. How can I ensure that SNPs with the ATAC are tested? I have poured over the documentation and past tickets and cannot seem to find an answer.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@plantformatics