Error from example code

[amrapalijz]

When I run the example at: https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/AnnotateText.java
I get the error
java.io.FileNotFoundException: http://data.bioontology.org/ontologies/MP/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMPATH_359
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1835)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1440)
at AnnotateText.get(AnnotateText.java:96)
at AnnotateText.printAnnotations(AnnotateText.java:49)
at AnnotateText.main(AnnotateText.java:26)
com.fasterxml.jackson.databind.JsonMappingException: No content to map due to end-of-input
at [Source: java.io.StringReader@30c7da1e; line: 1, column: 1]
at com.fasterxml.jackson.databind.JsonMappingException.from(JsonMappingException.java:164)
at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:2836)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:2778)
at com.fasterxml.jackson.databind.ObjectMapper.readTree(ObjectMapper.java:1659)
at AnnotateText.jsonToNode(AnnotateText.java:74)
at AnnotateText.printAnnotations(AnnotateText.java:49)
at AnnotateText.main(AnnotateText.java:26)
Class details
Exception in thread "main" java.lang.NullPointerException
at AnnotateText.printAnnotations(AnnotateText.java:51)
at AnnotateText.main(AnnotateText.java:26)

[ncbo-deployer]

I think that the ontology may have changed since the demo code was written. The following works:

http://data.bioontology.org/ontologies/MPATH/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMPATH_359

Ray

From: bioontology-admin [mailto:[email protected]] On Behalf Of Amrapali Zaveri
Sent: Thursday, October 29, 2015 10:25 AM
To: ncbo/ncbo_rest_sample_code
Subject: [bioontology-admin] [ncbo_rest_sample_code] Error from example code (#2)

When I run the example at: https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/AnnotateText.java
I get the error
java.io.FileNotFoundException: http://data.bioontology.org/ontologies/MP/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMPATH_359
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1835)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1440)
at AnnotateText.get(AnnotateText.java:96)
at AnnotateText.printAnnotations(AnnotateText.java:49)
at AnnotateText.main(AnnotateText.java:26)
com.fasterxml.jackson.databind.JsonMappingException: No content to map due to end-of-input
at [Source: java.io.StringReader@30c7da1https://github.com/java.io.StringReader/ncbo_rest_sample_code/commit/30c7da1e; line: 1, column: 1]
at com.fasterxml.jackson.databind.JsonMappingException.from(JsonMappingException.java:164)
at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:2836)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:2778)
at com.fasterxml.jackson.databind.ObjectMapper.readTree(ObjectMapper.java:1659)
at AnnotateText.jsonToNode(AnnotateText.java:74)
at AnnotateText.printAnnotations(AnnotateText.java:49)
at AnnotateText.main(AnnotateText.java:26)
Class details
Exception in thread "main" java.lang.NullPointerException
at AnnotateText.printAnnotations(AnnotateText.java:51)
at AnnotateText.main(AnnotateText.java:26)

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/2.