diff --git a/test/data/ontology_files/chebi_test.obo b/test/data/ontology_files/chebi_test.obo new file mode 100644 index 00000000..acb4e3c2 --- /dev/null +++ b/test/data/ontology_files/chebi_test.obo @@ -0,0 +1,228 @@ +format-version: 1.2 +data-version: 237 +date: 30:10:2024 06:16 +saved-by: chebi +subsetdef: 1_STAR "Preliminary entries" +subsetdef: 2_STAR "Annotated by 3rd party" +subsetdef: 3_STAR "Manually annotated by ChEBI Team" +synonymtypedef: BRAND_NAME "BRAND NAME" +synonymtypedef: INN "INN" +synonymtypedef: IUPAC_NAME "IUPAC NAME" +default-namespace: chebi_ontology +remark: Author: ChEBI curation team +remark: ChEBI Release version 237 +remark: ChEBI subsumes and replaces the Chemical Ontology first +remark: developed by Michael Ashburner & Pankaj Jaiswal. +remark: For any queries contact chebi-help@ebi.ac.uk +ontology: chebi + +[Term] +id: CHEBI:137366 +name: CHEBI:4042 +is_obsolete: true + +[Term] +id: CHEBI:137377 +name: CHEBI:81850 +is_obsolete: true + +[Term] +id: CHEBI:143109 +name: waterssdfsdfss +is_obsolete: true + +[Term] +id: CHEBI:177198 +name: CHEBI:50860 +is_obsolete: true + +[Term] +id: CHEBI:189822 +name: testing532 +is_obsolete: true + +[Term] +id: CHEBI:24431 +name: chemical entity +def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] +subset: 3_STAR +synonym: "chemical entity" EXACT [UniProt] + +[Term] +id: CHEBI:27189 +name: unclassifieds +is_obsolete: true + +[Term] +id: CHEBI:30430 +name: indium atom +def: "A metallic element first identified and named from the brilliant indigo (Latin indicum) blue line in its flame spectrum." [] +subset: 3_STAR +synonym: "49In" RELATED [IUPAC] +synonym: "In" RELATED [IUPAC] +synonym: "indio" RELATED [ChEBI] +synonym: "Indium" RELATED [ChEBI] +synonym: "indium" EXACT IUPAC_NAME [IUPAC] +synonym: "indium" RELATED [ChEBI] +xref: CAS:7440-74-6 {source="ChemIDplus"} +xref: CAS:7440-74-6 {source="NIST Chemistry WebBook"} +xref: Gmelin:16297 {source="Gmelin"} +xref: WebElements:In +is_a: CHEBI:33317 ! boron group element atom +property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/formula "In" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/In" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchikey "APFVFJFRJDLVQX-UHFFFAOYSA-N" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "114.81800" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "114.90388" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[In]" xsd:string + +[Term] +id: CHEBI:33250 +name: atom +alt_id: CHEBI:22671 +alt_id: CHEBI:23907 +def: "A chemical entity constituting the smallest component of an element having the chemical properties of the element." [] +subset: 3_STAR +synonym: "atom" EXACT IUPAC_NAME [IUPAC] +synonym: "atome" RELATED [IUPAC] +synonym: "atomo" RELATED [IUPAC] +synonym: "atoms" RELATED [ChEBI] +synonym: "atomus" RELATED [ChEBI] +synonym: "element" RELATED [ChEBI] +synonym: "elements" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity + +[Term] +id: CHEBI:33317 +name: boron group element atom +subset: 3_STAR +synonym: "boron group element" RELATED [ChEBI] +synonym: "boron group elements" RELATED [ChEBI] +synonym: "Element der Borgruppe" RELATED [ChEBI] +synonym: "group 13 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "group III elements" RELATED [ChEBI] +is_a: CHEBI:33560 ! p-block element atom + +[Term] +id: CHEBI:33318 +name: main group element atom +def: "An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table." [] +subset: 3_STAR +synonym: "Hauptgruppenelement" RELATED [ChEBI] +synonym: "Hauptgruppenelemente" RELATED [ChEBI] +synonym: "main group element" RELATED [ChEBI] +synonym: "main group elements" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:33560 +name: p-block element atom +def: "Any main group element atom belonging to the p-block of the periodic table." [] +subset: 3_STAR +synonym: "p-block element" RELATED [ChEBI] +synonym: "p-block elements" RELATED [ChEBI] +is_a: CHEBI:33318 ! main group element atom + +[Term] +id: CHEBI:49631 +name: gallium atom +alt_id: CHEBI:33326 +alt_id: CHEBI:49630 +def: "A metallic element predicted as eka-aluminium by Mendeleev in 1870 and discovered by Paul-Emile Lecoq de Boisbaudran in 1875. Named in honour of France (Latin Gallia) and perhaps also from the Latin gallus cock, a translation of Lecoq." [] +subset: 3_STAR +synonym: "31Ga" RELATED [IUPAC] +synonym: "Ga" RELATED [IUPAC] +synonym: "galio" RELATED [ChEBI] +synonym: "gallium" EXACT IUPAC_NAME [IUPAC] +synonym: "gallium" RELATED [ChEBI] +xref: CAS:7440-55-3 {source="ChemIDplus"} +xref: CAS:7440-55-3 {source="NIST Chemistry WebBook"} +xref: WebElements:Ga +is_a: CHEBI:33317 ! boron group element atom +property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/formula "Ga" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/Ga" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchikey "GYHNNYVSQQEPJS-UHFFFAOYSA-N" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "69.72300" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "68.92557" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[Ga]" xsd:string + +[Term] +id: CHEBI:64352 +name: UDP-N-acetyl-D-glucosamine(2-) +is_obsolete: true + +[Term] +id: CHEBI:64360 +name: tocilizumab +is_obsolete: true + +[Term] +id: CHEBI:64867 +name: PHS C26 +is_obsolete: true + +[Typedef] +id: has_functional_parent +name: has functional parent +is_cyclic: false +is_transitive: false + +[Typedef] +id: has_major_microspecies_at_pH_7_3 +name: has major microspecies at pH 7.3 +is_cyclic: true +is_transitive: false + +[Typedef] +id: has_parent_hydride +name: has parent hydride +is_cyclic: false +is_transitive: false + +[Typedef] +id: has_part +name: has part +xref: BFO:0000051 +is_cyclic: false +is_transitive: true + +[Typedef] +id: has_role +name: has role +xref: RO:0000087 +is_cyclic: false +is_transitive: false + +[Typedef] +id: is_conjugate_acid_of +name: is conjugate acid of +is_cyclic: true +is_transitive: false +inverse_of: is_conjugate_base_of ! is conjugate base of + +[Typedef] +id: is_conjugate_base_of +name: is conjugate base of +is_cyclic: true +is_transitive: false + +[Typedef] +id: is_enantiomer_of +name: is enantiomer of +is_cyclic: true +is_transitive: false + +[Typedef] +id: is_substituent_group_from +name: is substituent group from +is_cyclic: false +is_transitive: false + +[Typedef] +id: is_tautomer_of +name: is tautomer of +is_cyclic: true +is_transitive: true +