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CHANGELOG.md

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Changelog

[3.2.2] - 2023-10-15

  • Ontoportal Stack Changes:
    • nodejs v16
    • certbot is installed by default
    • ontologies_api v5.26.2
    • ncbo_cron v5.26.2

[3.2.1] - 2023-09-24

  • Disable deprecated ssh cyphers and kexalgorithms to make vulnerability scanners happier
  • improve robustness of the firstboot and hostname_lookup scripts
  • Ontoportal Stack Changes:

[3.2.0] - 2023-07-26

  • OntoPortal Stack Changes:
    • tomcat v9.0.78
    • ruby v2.7.8
    • solr v8.11.2
    • ontologies_api v5.25.0
    • ncbo_cron v5.25.0
    • bioportal_web_ui v6.11.0

[3.1.1] - 2022-06-02

  • OntoPortal Stack Changes:
    • tomcat v9.0.63
    • Disable TLS 1 and weak ciphers in apache and nginx

[3.1.0] - 2022-05-10

  • OntoPortal Stack Changes:
    • bioportal_web_ui v6.7.1
    • ontologies_api/ncbo_cron v5.22.3
    • ruby v2.7.6
    • tomcat v9.0.62 installed from source
    • redis instances are renamed goo -> goo_cache and http -> http_cache

[3.0.6] - 2022-01-07

  • Addressed log4j/log4shell CVE-2021-44228 vulnerability
  • OntoPortal Stack Changes:
    • bioportal_web_ui v6.5.1
    • ontologies_api/ncbo_cron v5.22.1
    • solr upgraded to 8.11.1
    • ruby 2.6.9
    • annotatorplus
    • https is enabled in nginx for the api on port 8443.
  • Known Issues:
    • deployment of proper TLS/SSL certificates is required for the full enablement of HTTPS

[3.0.5] - 2021-09-24

  • AllegroGraph is removed because it is not fully supported at this time. This reduced the size of OVF down to 1.7Gb
  • OntoPortal Stack Changes:
  • Known Issues:
    • OntoPortal footer displays incorrect version of the appliance.

[3.0.4] - 2021-07-07

  • OntoPortal Stack Changes:
    • bioportal_web_ui v6.4.0
    • ontologies_api/ncbo_cron v5.22.0
    • solr upgraded to 8.8.2
    • ruby 2.6.7
    • https is enabled in Apache/Web_UI using self-signed certificates.
  • Fixed:

[3.0.3] - 2020-12-09

  • Updated AlegroGraph to v7.0.4 RC3 to address goo compatibility issues.
  • OntoPortal Stack Changes:
    • bioportal_web_ui v6.2.0
    • ontologies_api/ncbo_cron v5.19.0
    • Ruby on Rails v5.2
    • CentOS 7.9

[3.0.2] - 2020-08-07

  • OntoPortal Web UI displays a maintenance page until firstboot process is completed.
  • OntoPortal Stack Changes:
    • bioportal_web_ui v5.9.5
    • ontologies_api/ncbo_cron v5.18.1
    • nginx downgraded to v1.16 which is included in epel yum repo
    • ruby 2.6.6
  • Fixed:
    • unable to yum update #17
    • firstboot script fail on AWS #18

[3.0.1] - 2020-05-06

  • Application Stack updates:
  • CentOS upgraded to 7.9
  • disable root passwod. Users have to use centos user login for SSH access.
  • Fixed:

[3.0.0] - 2020-04-24

  • Packaging:
    • appliance packaging is fully automated with packer, puppet, deployment and bootstrap scripts.
  • OS Changes for VMWare ova package:
    • CentOS 6 is upgraded to CentOS 7.7
    • console based firstboot configuration is removed.
    • eth0 is configured to do DHCP by default
    • root is required to change initial password on first login
  • Application Stack changes:
    • Apache, MariaDB, memcached, tomcat, redis are installed from EPEL repo
    • Nginx updated to 1.17
    • Solr updated to 8.2
    • Java 11
    • ruby 2.5.7
    • AllegroGraph v6.4.1 is installed but not activated.
    • Directory structure is changed:
      • bioportal_web_ui is movded from /srv/rails/bioportal_web_ui to /srv/ontoportal/bioportal_web_ui
      • ontologies_api is moved from /srv/ncbo/ontologies_api to /srv/ontoportal/ontologies_api
      • ncbo_cron is moved from /srv/ncbo/ncbo_cron to /srv/ontoportal/ncbo_cron
      • virtual_appliance which includes deployment, configs and utilities are moved to /srv/ontoportal/virtual_appliance
      • application data lives in /srv/ontoportal/data. One option for expanding storage would be to mount a new disk there after coping all data
  • Ontoportal Stack changes:
    • bioportal_web_ui v5.9.3
    • ontologies_api and ncbo_cron v5.16.0
    • biomixer is updated to support https
    • new: annotatorplus proxy
  • Appliance includes deployment scripts for performing limited minor and patch version updates of Ontoportal application components.
  • Appliance customization process is changed:
    • /srv/ontoportal/virtual_appliance/appliance_config/site_config.rb for setting basic customization such as hostname, Site Name and Organzation.
    • /srv/ontoportal/virtual_appliance/appliance_config/ customization and overwrites for ontoportal components such as UI and API
    • /srv/ontoportal/virtual_appliance/appliance_config/deployments contains application deployment scripts
  • experimental support for AllegroGraph
  • Updated Ontoportal branding