From bc970d5ee99cfcb3a15ae306ecb1f73d86aca69c Mon Sep 17 00:00:00 2001 From: brownag Date: Thu, 10 Oct 2024 21:26:08 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20ncss-tec?= =?UTF-8?q?h/aqp@dd3fce1f4c634b3ac27b6c90d0e05d0a317937ff=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- ...tion-to-SoilProfileCollection-Objects.html | 4 +- articles/Munsell-color-conversion.html | 2 +- articles/NCSP.html | 2 +- articles/aqp-overview.html | 2 +- articles/index.html | 2 +- articles/label-placement.html | 2 +- articles/missing-data.html | 2 +- articles/new-in-aqp-2.html | 2 +- authors.html | 2 +- index.html | 2 +- news/index.html | 18 ++++--- pkgdown.yml | 2 +- reference/GHL.html | 2 +- reference/HzDepthLogicSubset.html | 2 +- reference/L1_profiles.html | 2 +- reference/NCSP.html | 2 +- reference/ROSETTA.centroids.html | 2 +- reference/SANN_1D.html | 2 +- reference/SPC.with.overlap.html | 2 +- reference/SoilProfileCollection-class.html | 38 +++++-------- reference/SoilProfileCollection-crs.html | 4 +- ...oilProfileCollection-plotting-methods.html | 4 +- reference/SoilTextureLevels.html | 2 +- reference/accumulateDepths.html | 2 +- reference/addBracket.html | 2 +- reference/addDiagnosticBracket.html | 2 +- reference/addVolumeFraction.html | 2 +- reference/aggregateColor.html | 2 +- reference/aggregateSoilDepth.html | 2 +- reference/alignTransect.html | 2 +- reference/allocate.html | 2 +- reference/aqp-package.html | 2 +- reference/aqp_df_class.html | 2 +- reference/argillic.clay.increase.depth.html | 2 +- reference/barron.torrent.redness.LAB.html | 2 +- reference/bootstrapSoilTexture.html | 2 +- reference/brierScore.html | 2 +- reference/buntley.westin.index.html | 2 +- reference/ca630.html | 2 +- reference/checkHzDepthLogic.html | 2 +- reference/checkSPC.html | 2 +- reference/coercion-methods.html | 53 ++++++++++--------- reference/col2Munsell.html | 2 +- reference/colorChart.html | 2 +- reference/colorContrast.html | 2 +- reference/colorContrastPlot.html | 2 +- reference/colorQuantiles.html | 2 +- .../combine-SoilProfileCollection-method.html | 2 +- reference/compareSites.html | 2 +- reference/compositeSPC.html | 2 +- reference/confusionIndex.html | 2 +- reference/contrastChart.html | 2 +- reference/contrastClass.html | 2 +- reference/correctAWC.html | 2 +- reference/crit.clay.argillic.html | 2 +- reference/denormalize.html | 2 +- reference/depthOf.html | 2 +- reference/depthWeights.html | 2 +- reference/depth_units.html | 2 +- reference/depths.html | 2 +- reference/diagnostic_hz.html | 2 +- .../dice-SoilProfileCollection-method.html | 2 +- reference/dollarsign-set.html | 2 +- reference/dollarsign.html | 2 +- reference/doublebracket-set.html | 4 +- reference/doublebracket.html | 4 +- reference/duplicate.html | 2 +- reference/electroStatics_1D.html | 2 +- reference/equivalentMunsellChips.html | 2 +- reference/equivalent_munsell.html | 2 +- reference/estimateAWC.html | 2 +- reference/estimatePSCS.html | 2 +- reference/estimateSoilColor.html | 2 +- reference/estimateSoilDepth.html | 2 +- reference/evalGenHZ.html | 2 +- reference/evalMissingData.html | 2 +- reference/explainPlotSPC.html | 2 +- reference/fillHzGaps.html | 2 +- reference/fixOverlap.html | 2 +- reference/flagOverlappingHz.html | 2 +- reference/fragmentClasses.html | 2 +- reference/fragmentSieve.html | 2 +- reference/genSlabLabels.html | 2 +- reference/generalize.hz.html | 2 +- reference/genhzTableToAdjMat.html | 2 +- reference/get.increase.matrix.html | 2 +- reference/get.ml.hz.html | 2 +- reference/getArgillicBounds.html | 2 +- reference/getCambicBounds.html | 2 +- reference/getClosestMunsellChip.html | 2 +- reference/getLastHorizonID.html | 2 +- reference/getSoilDepthClass.html | 2 +- reference/getSurfaceHorizonDepth.html | 2 +- reference/glom.html | 2 +- reference/glomApply.html | 2 +- reference/grepSPC.html | 2 +- reference/groupSPC.html | 2 +- reference/groupedProfilePlot.html | 2 +- reference/guessGenHzLevels.html | 2 +- reference/guessHzAttrName.html | 2 +- reference/harden.melanization.html | 2 +- reference/harden.rubification.html | 2 +- ...armonize-SoilProfileCollection-method.html | 2 +- reference/hasDarkColors.html | 2 +- reference/horizonColorIndices.html | 2 +- reference/horizonDepths.html | 2 +- reference/horizonNames.html | 2 +- reference/horizons.html | 2 +- reference/huePosition.html | 2 +- reference/huePositionCircle.html | 2 +- reference/hurst.redness.html | 2 +- reference/hzDepthTests.html | 2 +- reference/hzDesgn.html | 2 +- reference/hzDistinctnessCodeToOffset.html | 2 +- reference/hzID.html | 2 +- reference/hzMetadata.html | 2 +- reference/hzOffset.html | 2 +- reference/hzTopographyCodeToLineType.html | 2 +- reference/hzTopographyCodeToOffset.html | 2 +- reference/hzTransitionProbabilities.html | 2 +- reference/hz_dissolve.html | 2 +- reference/hz_intersect.html | 2 +- reference/hz_lag.html | 2 +- reference/hz_segment.html | 2 +- reference/hz_to_taxpartsize.html | 2 +- reference/hzdesgnname.html | 2 +- reference/hzidname.html | 2 +- reference/hzmetaname.html | 2 +- reference/hztexclname.html | 2 +- reference/idname.html | 2 +- reference/index.html | 10 ++-- reference/initSpatial.html | 2 +- reference/invertLabelColor.html | 2 +- reference/isEmpty.html | 2 +- reference/jacobs2000.html | 2 +- reference/length.html | 2 +- reference/lookup_taxpartsize.html | 2 +- reference/lunique.html | 2 +- reference/max.html | 2 +- reference/metadata.html | 2 +- reference/min.html | 2 +- reference/missingDataGrid.html | 2 +- reference/mixMunsell.html | 2 +- reference/mollic.thickness.requirement.html | 2 +- reference/munsell.html | 2 +- reference/munsell.spectra.html | 2 +- reference/munsell2rgb.html | 2 +- ...sell2spc-SoilProfileCollection-method.html | 2 +- reference/munsellHuePosition.html | 2 +- reference/mutate_profile.html | 2 +- reference/names.html | 2 +- reference/nrow.html | 2 +- reference/osd.html | 2 +- reference/overlapMetrics.html | 2 +- reference/panel.depth_function.html | 2 +- reference/parseMunsell.html | 2 +- reference/pbindlist.html | 2 +- reference/perturb.html | 2 +- reference/plotColorMixture.html | 2 +- reference/plotColorQuantiles.html | 2 +- reference/plotMultipleSPC.html | 2 +- reference/plot_distance_graph.html | 2 +- reference/previewColors.html | 2 +- reference/profileApply.html | 2 +- reference/profileGroupLabels.html | 2 +- reference/profileInformationIndex.html | 2 +- reference/profile_compare.html | 2 +- reference/profile_id.html | 2 +- reference/quickSPC.html | 2 +- reference/random_profile.html | 2 +- reference/reaction.html | 2 +- reference/reactionclass.html | 2 +- reference/rebuildSPC.html | 2 +- reference/reduceSPC.html | 2 +- reference/reorderHorizons.html | 2 +- reference/repairMissingHzDepths.html | 2 +- reference/replaceHorizons.html | 2 +- reference/restrictions.html | 2 +- reference/rgb2munsell.html | 2 +- reference/rowley2019.html | 2 +- reference/shannonEntropy.html | 2 +- reference/show.html | 2 +- reference/sierraTransect.html | 2 +- reference/sim.html | 2 +- reference/simulateColor.html | 2 +- reference/singlebracket.html | 2 +- reference/site.html | 2 +- reference/siteNames.html | 2 +- reference/slab.html | 2 +- reference/slice.html | 2 +- reference/slicedHSD.html | 2 +- reference/soilColorSignature.html | 2 +- reference/soilPalette.html | 2 +- reference/soilTextureColorPal.html | 2 +- reference/soil_minerals.html | 2 +- reference/soiltexture.html | 2 +- reference/sp1.html | 2 +- reference/sp2.html | 2 +- reference/sp3.html | 2 +- reference/sp4.html | 9 +--- reference/sp5.html | 2 +- reference/sp6.html | 2 +- ...mpspline-SoilProfileCollection-method.html | 2 +- reference/spc_in_sync.html | 2 +- reference/spec2Munsell.html | 2 +- reference/spectral.reference.html | 2 +- .../split-SoilProfileCollection-method.html | 2 +- reference/splitLogicErrors.html | 2 +- reference/subApply.html | 2 +- .../subset-SoilProfileCollection-method.html | 2 +- ...subsetHz-SoilProfileCollection-method.html | 2 +- reference/subsetProfiles.html | 2 +- reference/summarizeSPC.html | 2 +- reference/tauW.html | 2 +- reference/texture.html | 2 +- reference/textureTriangleSummary.html | 2 +- reference/thicknessOf.html | 2 +- reference/thompson.bell.darkness.html | 2 +- reference/traditionalColorNames.html | 2 +- reference/transform.html | 2 +- reference/unique.html | 2 +- reference/unroll.html | 2 +- reference/us.state.soils.html | 2 +- reference/validSpatialData.html | 2 +- reference/warpHorizons.html | 2 +- reference/wilson2022.html | 2 +- reference/xtableTauW.html | 2 +- 228 files changed, 290 insertions(+), 294 deletions(-) diff --git a/404.html b/404.html index e407b6f2..30d9ec86 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/Introduction-to-SoilProfileCollection-Objects.html b/articles/Introduction-to-SoilProfileCollection-Objects.html index 4a47cd95..8e7df70c 100644 --- a/articles/Introduction-to-SoilProfileCollection-Objects.html +++ b/articles/Introduction-to-SoilProfileCollection-Objects.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 @@ -1795,7 +1795,7 @@

Pair-Wise Dissimilarity: NCSP()
-

This document is based on aqp version 2.0.4.

+

This document is based on aqp version 2.1.0.

diff --git a/articles/Munsell-color-conversion.html b/articles/Munsell-color-conversion.html index c4ec2f1b..bad9aeda 100644 --- a/articles/Munsell-color-conversion.html +++ b/articles/Munsell-color-conversion.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/NCSP.html b/articles/NCSP.html index 3d7c237b..3b28b47e 100644 --- a/articles/NCSP.html +++ b/articles/NCSP.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/aqp-overview.html b/articles/aqp-overview.html index e9a44a9f..aa700810 100644 --- a/articles/aqp-overview.html +++ b/articles/aqp-overview.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/index.html b/articles/index.html index e36c599f..2d973122 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/label-placement.html b/articles/label-placement.html index 6fcdf149..5b6872a8 100644 --- a/articles/label-placement.html +++ b/articles/label-placement.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/missing-data.html b/articles/missing-data.html index 5abeb649..98eb3804 100644 --- a/articles/missing-data.html +++ b/articles/missing-data.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/articles/new-in-aqp-2.html b/articles/new-in-aqp-2.html index 562647f7..f479d685 100644 --- a/articles/new-in-aqp-2.html +++ b/articles/new-in-aqp-2.html @@ -32,7 +32,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/authors.html b/authors.html index eed6340b..9b7b0095 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/index.html b/index.html index c7da26f0..acfc54cc 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/news/index.html b/news/index.html index d2118cfa..79cb360e 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 @@ -76,15 +76,21 @@

Changelog

-

aqp 2.0.4 (2024-10-10)2024-07-30

+

aqp 2.1.0 (2024-10-10)

+
  • added Munsell values of 8.5 and 9.5 to Munsell look up table and (interpolated) reference spectra (#318)
    • +
  • +munsell2rgb() now safely selects the closest Munsell value and chroma to those available in the package LUT
    • +
  • new function soilTextureColorPal() for suggesting a color palette suitable for soil texture class
    • +
  • +Breaking Change: @sp slot of the SoilProfileCollection object, and dependency on sp package, has been removed.
    • +
  • Any SoilProfileCollection objects previously written to file (.rda, .rds) with aqp <2.1.x will need to be rebuilt using rebuildSPC() due to changes to S4 object structure
    • +
+
+

aqp 2.0.4 (2024-07-30)2024-07-30

  • CRAN release
  • ragged bottom lines in plotSPC() now adjusted as function of number of profiles and device width
  • additional metadata from plotSPC() saved to last_spc_plot in aqp.env
    • -
  • added Munsell values of 8.5 and 9.5 to Munsell LUT and (interpolated) reference spectra (#318)
    • -
  • -munsell2rgb() now safely selects the closest Munsell value and chroma to those available in the package LUT
    • -
  • new function soilTextureColorPal() for suggesting a color palette suitable for soil texture class

aqp 2.0.3 (2024-04-18)2024-04-18

diff --git a/pkgdown.yml b/pkgdown.yml index 8f7659e2..8ecf9216 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -9,4 +9,4 @@ articles: Munsell-color-conversion: Munsell-color-conversion.html NCSP: NCSP.html new-in-aqp-2: new-in-aqp-2.html -last_built: 2024-10-10T20:17Z +last_built: 2024-10-10T21:22Z diff --git a/reference/GHL.html b/reference/GHL.html index 6c85247b..ff0d4f70 100644 --- a/reference/GHL.html +++ b/reference/GHL.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0
diff --git a/reference/HzDepthLogicSubset.html b/reference/HzDepthLogicSubset.html index b447f8eb..7a8bbb6c 100644 --- a/reference/HzDepthLogicSubset.html +++ b/reference/HzDepthLogicSubset.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/L1_profiles.html b/reference/L1_profiles.html index e0df84b3..6eda4171 100644 --- a/reference/L1_profiles.html +++ b/reference/L1_profiles.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/NCSP.html b/reference/NCSP.html index 89d4ab38..d8ec277d 100644 --- a/reference/NCSP.html +++ b/reference/NCSP.html @@ -55,7 +55,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/ROSETTA.centroids.html b/reference/ROSETTA.centroids.html index 4a8ea242..d4b1ff90 100644 --- a/reference/ROSETTA.centroids.html +++ b/reference/ROSETTA.centroids.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/SANN_1D.html b/reference/SANN_1D.html index 8957eb62..bc1f30e9 100644 --- a/reference/SANN_1D.html +++ b/reference/SANN_1D.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/SPC.with.overlap.html b/reference/SPC.with.overlap.html index 0e120fa2..28319428 100644 --- a/reference/SPC.with.overlap.html +++ b/reference/SPC.with.overlap.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/SoilProfileCollection-class.html b/reference/SoilProfileCollection-class.html index 9116b7ab..d0b73ff0 100644 --- a/reference/SoilProfileCollection-class.html +++ b/reference/SoilProfileCollection-class.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 @@ -90,7 +90,6 @@

An S4 object representation of a group of soil profiles.

horizons = data.frame(id = character(0), hzID = character(0), top = numeric(0), bottom = numeric(0), stringsAsFactors = FALSE), site = data.frame(id = character(0), stringsAsFactors = FALSE), - sp = new("SpatialPoints"), diagnostic = data.frame(stringsAsFactors = FALSE), restrictions = data.frame(stringsAsFactors = FALSE) ) @@ -101,41 +100,41 @@

Arguments

idcol
-

character Profile ID Column Name

+

character. Profile ID Column Name

hzidcol
-

character Horizon ID Column Name

+

character. Horizon ID Column Name

depthcols
-

character, length 2 Top and Bottom Depth Column Names

+

character. length 2 Top and Bottom Depth Column Names

metadata
-

list, metadata including data.frame class in use and depth units

+

list. metadata including data.frame class in use and depth units

horizons
-

data.frame An object inheriting from data.frame containing Horizon data.

+

data.frame. An object inheriting from data.frame containing Horizon data.

site
-

data.frame An object inheriting from data.frame containing Site data.

- - -
sp
-

SpatialPoints A SpatialPoints object. No longer used in aqp 2+, see ?initSpatial

+

data.frame. An object inheriting from data.frame containing Site data.

diagnostic
-

data.frame An object inheriting from data.frame containing diagnostic feature data. Must contain profile ID. See diagnostic_hz()

+

data.frame. An object inheriting from data.frame containing diagnostic feature data. Must contain profile ID. See diagnostic_hz()

restrictions
-

data.frame An object inheriting from data.frame containing restrictive feature data. Must contain profile ID. See restrictions()

+

data.frame. An object inheriting from data.frame containing restrictive feature data. Must contain profile ID. See restrictions()

+
+

Details

+

After aqp 2.0.2, the @sp slot was removed from the SoilProfileCollection object. If you run into errors related to old object definitions, use rebuildSPC() on the problematic object.

+

Slots

@@ -164,10 +163,6 @@

Slots

data.frame.

-
sp
-

SpatialPoints.

- -
diagnostic

data.frame.

@@ -187,7 +182,7 @@

Examples


 ## structure of default, empty SoilProfileCollection
 str(SoilProfileCollection())
-#> Formal class 'SoilProfileCollection' [package "aqp"] with 9 slots
+#> Formal class 'SoilProfileCollection' [package "aqp"] with 8 slots
 #>   ..@ idcol       : chr "id"
 #>   ..@ hzidcol     : chr "hzID"
 #>   ..@ depthcols   : chr [1:2] "top" "bottom"
@@ -205,11 +200,6 @@ 
Examples

 #>   .. ..$ bottom: num(0) 
 #>   ..@ site        :'data.frame':	0 obs. of  1 variable:
 #>   .. ..$ id: chr(0) 
-#>   ..@ sp          :Formal class 'SpatialPoints' [package "sp"] with 3 slots
-#>   .. .. ..@ coords     : num [1, 1] 0
-#>   .. .. ..@ bbox       : logi [1, 1] NA
-#>   .. .. ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot
-#>   .. .. .. .. ..@ projargs: chr NA
 #>   ..@ diagnostic  :'data.frame':	0 obs. of  0 variables
 #>   ..@ restrictions:'data.frame':	0 obs. of  0 variables
 
diff --git a/reference/SoilProfileCollection-crs.html b/reference/SoilProfileCollection-crs.html
index a58b7638..4cb478bb 100644
--- a/reference/SoilProfileCollection-crs.html
+++ b/reference/SoilProfileCollection-crs.html
@@ -20,7 +20,7 @@
       
       
         aqp
-        2.0.4
+        2.1.0
@@ -96,7 +96,7 @@

Get or Set Coordinate Reference System for SoilProfileCollection

# S4 method for class 'SoilProfileCollection' proj4string(obj) -# S4 method for class 'SoilProfileCollection,ANY' +# S4 method for class 'SoilProfileCollection' proj4string(obj) <- value
diff --git a/reference/SoilProfileCollection-plotting-methods.html b/reference/SoilProfileCollection-plotting-methods.html index 5401ee73..b6f3184b 100644 --- a/reference/SoilProfileCollection-plotting-methods.html +++ b/reference/SoilProfileCollection-plotting-methods.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 @@ -140,7 +140,7 @@

Create Soil Profile Sketches

... ) -# S4 method for class 'SoilProfileCollection,ANY' +# S4 method for class 'SoilProfileCollection' plot(x, y, ...) diff --git a/reference/SoilTextureLevels.html b/reference/SoilTextureLevels.html index a857cfd9..34fb0abe 100644 --- a/reference/SoilTextureLevels.html +++ b/reference/SoilTextureLevels.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/accumulateDepths.html b/reference/accumulateDepths.html index 33cfa212..ca0fcb06 100644 --- a/reference/accumulateDepths.html +++ b/reference/accumulateDepths.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/addBracket.html b/reference/addBracket.html index 2b623f26..c54d59f0 100644 --- a/reference/addBracket.html +++ b/reference/addBracket.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/addDiagnosticBracket.html b/reference/addDiagnosticBracket.html index 4201093c..0724c0ba 100644 --- a/reference/addDiagnosticBracket.html +++ b/reference/addDiagnosticBracket.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/addVolumeFraction.html b/reference/addVolumeFraction.html index 6ed8d895..8d68a9d7 100644 --- a/reference/addVolumeFraction.html +++ b/reference/addVolumeFraction.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/aggregateColor.html b/reference/aggregateColor.html index e3d4f74d..ce6093b1 100644 --- a/reference/aggregateColor.html +++ b/reference/aggregateColor.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/aggregateSoilDepth.html b/reference/aggregateSoilDepth.html index e5e86ce0..6ae32328 100644 --- a/reference/aggregateSoilDepth.html +++ b/reference/aggregateSoilDepth.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/alignTransect.html b/reference/alignTransect.html index faff4113..0311397a 100644 --- a/reference/alignTransect.html +++ b/reference/alignTransect.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/allocate.html b/reference/allocate.html index 318c5e27..e6394fb7 100644 --- a/reference/allocate.html +++ b/reference/allocate.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/aqp-package.html b/reference/aqp-package.html index 40f08628..93a84431 100644 --- a/reference/aqp-package.html +++ b/reference/aqp-package.html @@ -28,7 +28,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/aqp_df_class.html b/reference/aqp_df_class.html index d40b7a8f..479a4540 100644 --- a/reference/aqp_df_class.html +++ b/reference/aqp_df_class.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/argillic.clay.increase.depth.html b/reference/argillic.clay.increase.depth.html index 5bcf8738..7a98fcb5 100644 --- a/reference/argillic.clay.increase.depth.html +++ b/reference/argillic.clay.increase.depth.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/barron.torrent.redness.LAB.html b/reference/barron.torrent.redness.LAB.html index fd33445d..5539487c 100644 --- a/reference/barron.torrent.redness.LAB.html +++ b/reference/barron.torrent.redness.LAB.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/bootstrapSoilTexture.html b/reference/bootstrapSoilTexture.html index 8e11f751..0437f1ec 100644 --- a/reference/bootstrapSoilTexture.html +++ b/reference/bootstrapSoilTexture.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/brierScore.html b/reference/brierScore.html index 3672a027..9ce9b3ef 100644 --- a/reference/brierScore.html +++ b/reference/brierScore.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/buntley.westin.index.html b/reference/buntley.westin.index.html index 7b2a9e25..aa3efc74 100644 --- a/reference/buntley.westin.index.html +++ b/reference/buntley.westin.index.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/ca630.html b/reference/ca630.html index b870c8f5..a984f0da 100644 --- a/reference/ca630.html +++ b/reference/ca630.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/checkHzDepthLogic.html b/reference/checkHzDepthLogic.html index 05e662a2..2e0b3b10 100644 --- a/reference/checkHzDepthLogic.html +++ b/reference/checkHzDepthLogic.html @@ -23,7 +23,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/checkSPC.html b/reference/checkSPC.html index 9e8e0abf..16c5fc69 100644 --- a/reference/checkSPC.html +++ b/reference/checkSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/coercion-methods.html b/reference/coercion-methods.html index 25f0a319..86f55a19 100644 --- a/reference/coercion-methods.html +++ b/reference/coercion-methods.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 @@ -113,20 +113,19 @@

Examples

# sp5 str(sp5) -#> Formal class 'SoilProfileCollection' [package "aqp"] with 9 slots +#> Formal class 'SoilProfileCollection' [package "aqp"] with 8 slots #> ..@ idcol : chr "soil" #> ..@ hzidcol : chr "hzID" #> ..@ depthcols : chr [1:2] "top" "bottom" -#> ..@ metadata :List of 9 +#> ..@ metadata :List of 8 #> .. ..$ aqp_df_class : chr "data.frame" #> .. ..$ aqp_group_by : chr "" #> .. ..$ aqp_hzdesgn : chr "name" #> .. ..$ aqp_hztexcl : chr "" #> .. ..$ depth_units : chr "cm" #> .. ..$ stringsAsFactors: logi FALSE -#> .. ..$ original.order : int [1:1539] 1 2 3 4 5 6 7 8 9 10 ... #> .. ..$ citation : chr "F. Carre, M.C. Girard. 2002. Quantitative mapping of soil types based on regression kriging of taxonomic distan"| __truncated__ -#> .. ..$ dateAdded : Date[1:1], format: "2023-04-25" +#> .. ..$ dateAdded : Date[1:1], format: "2024-04-01" #> ..@ horizons :'data.frame': 1539 obs. of 19 variables: #> .. ..$ soil : chr [1:1539] "soil1" "soil1" "soil1" "soil1" ... #> .. ..$ sand : num [1:1539] 32.3 29 34.9 38.2 32.2 25.2 24.4 24 21.2 18.4 ... @@ -149,30 +148,24 @@

Examples

#> .. ..$ name : chr [1:1539] "H1" "H2" "H3" "H4" ... #> ..@ site :'data.frame': 296 obs. of 1 variable: #> .. ..$ soil: chr [1:296] "soil1" "soil10" "soil100" "soil101" ... -#> ..@ sp :Formal class 'SpatialPoints' [package "sp"] with 3 slots -#> .. .. ..@ coords : num [1, 1] 0 -#> .. .. ..@ bbox : logi [1, 1] NA -#> .. .. ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot -#> .. .. .. .. ..@ projargs: chr NA #> ..@ diagnostic :'data.frame': 0 obs. of 0 variables #> ..@ restrictions:'data.frame': 0 obs. of 0 variables # list output str(as(sp5, 'list')) -#> List of 9 +#> List of 8 #> $ idcol : chr "soil" #> $ hzidcol : chr "hzID" #> $ depthcols : chr [1:2] "top" "bottom" -#> $ metadata :List of 9 +#> $ metadata :List of 8 #> ..$ aqp_df_class : chr "data.frame" #> ..$ aqp_group_by : chr "" #> ..$ aqp_hzdesgn : chr "name" #> ..$ aqp_hztexcl : chr "" #> ..$ depth_units : chr "cm" #> ..$ stringsAsFactors: logi FALSE -#> ..$ original.order : int [1:1539] 1 2 3 4 5 6 7 8 9 10 ... #> ..$ citation : chr "F. Carre, M.C. Girard. 2002. Quantitative mapping of soil types based on regression kriging of taxonomic distan"| __truncated__ -#> ..$ dateAdded : Date[1:1], format: "2023-04-25" +#> ..$ dateAdded : Date[1:1], format: "2024-04-01" #> $ horizons :'data.frame': 1539 obs. of 19 variables: #> ..$ soil : chr [1:1539] "soil1" "soil1" "soil1" "soil1" ... #> ..$ sand : num [1:1539] 32.3 29 34.9 38.2 32.2 25.2 24.4 24 21.2 18.4 ... @@ -195,11 +188,6 @@

Examples

#> ..$ name : chr [1:1539] "H1" "H2" "H3" "H4" ... #> $ site :'data.frame': 296 obs. of 1 variable: #> ..$ soil: chr [1:296] "soil1" "soil10" "soil100" "soil101" ... -#> $ sp :Formal class 'SpatialPoints' [package "sp"] with 3 slots -#> .. ..@ coords : num [1, 1] 0 -#> .. ..@ bbox : logi [1, 1] NA -#> .. ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot -#> .. .. .. ..@ projargs: chr NA #> $ diagnostic :'data.frame': 0 obs. of 0 variables #> $ restrictions:'data.frame': 0 obs. of 0 variables @@ -231,10 +219,29 @@

Examples

sp5$x <- sp5$y <- rnorm(length(sp5)) initSpatial(sp5, crs = "OGC:CRS84") <- ~ x + y -# SpatialPointsDataFrame output -str(as(sp5, 'SpatialPointsDataFrame')) +if (requireNamespace("sf")) { + + # sf output + str(as(sp5, 'sf')) + + # SpatialPointsDataFrame output + str(as(sp5, 'SpatialPointsDataFrame')) + + # SpatialPoints output + str(as(sp5, 'SpatialPoints')) + +} #> Loading required namespace: sf #> only site data are extracted +#> Classes ‘sf’ and 'data.frame': 296 obs. of 4 variables: +#> $ soil : chr "soil1" "soil10" "soil100" "soil101" ... +#> $ y : num 0.524 1.309 0.795 -0.597 -0.779 ... +#> $ x : num 0.524 1.309 0.795 -0.597 -0.779 ... +#> $ geometry:sfc_POINT of length 296; first list element: 'XY' num 0.524 0.524 +#> - attr(*, "sf_column")= chr "geometry" +#> - attr(*, "agr")= Factor w/ 3 levels "constant","aggregate",..: NA NA NA +#> ..- attr(*, "names")= chr [1:3] "soil" "y" "x" +#> only site data are extracted #> Formal class 'SpatialPointsDataFrame' [package "sp"] with 5 slots #> ..@ data :'data.frame': 296 obs. of 3 variables: #> .. ..$ soil: chr [1:296] "soil1" "soil10" "soil100" "soil101" ... @@ -252,9 +259,6 @@

Examples

#> ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot #> .. .. ..@ projargs: chr "+proj=longlat +datum=WGS84 +no_defs" #> .. .. ..$ comment: chr "GEOGCRS[\"WGS 84\",\n DATUM[\"World Geodetic System 1984\",\n ELLIPSOID[\"WGS 84\",6378137,298.257223"| __truncated__ - -# SpatialPoints output -str(as(sp5, 'SpatialPoints')) #> only site data are extracted #> Formal class 'SpatialPoints' [package "sp"] with 3 slots #> ..@ coords : num [1:296, 1:2] 0.524 1.309 0.795 -0.597 -0.779 ... @@ -268,6 +272,7 @@

Examples

#> ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot #> .. .. ..@ projargs: chr "+proj=longlat +datum=WGS84 +no_defs" #> .. .. ..$ comment: chr "GEOGCRS[\"WGS 84\",\n DATUM[\"World Geodetic System 1984\",\n ELLIPSOID[\"WGS 84\",6378137,298.257223"| __truncated__ + diff --git a/reference/col2Munsell.html b/reference/col2Munsell.html index 5937427c..c1fe7ad1 100644 --- a/reference/col2Munsell.html +++ b/reference/col2Munsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/colorChart.html b/reference/colorChart.html index 666fd4c0..2838d859 100644 --- a/reference/colorChart.html +++ b/reference/colorChart.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/colorContrast.html b/reference/colorContrast.html index b5a55314..b036249e 100644 --- a/reference/colorContrast.html +++ b/reference/colorContrast.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/colorContrastPlot.html b/reference/colorContrastPlot.html index 2d9524f4..fd455324 100644 --- a/reference/colorContrastPlot.html +++ b/reference/colorContrastPlot.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/colorQuantiles.html b/reference/colorQuantiles.html index e278395a..60a271d4 100644 --- a/reference/colorQuantiles.html +++ b/reference/colorQuantiles.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/combine-SoilProfileCollection-method.html b/reference/combine-SoilProfileCollection-method.html index 9a503e45..dec5fbc5 100644 --- a/reference/combine-SoilProfileCollection-method.html +++ b/reference/combine-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/compareSites.html b/reference/compareSites.html index 1b9e15aa..7f7ab0f5 100644 --- a/reference/compareSites.html +++ b/reference/compareSites.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/compositeSPC.html b/reference/compositeSPC.html index eab2564a..026a896f 100644 --- a/reference/compositeSPC.html +++ b/reference/compositeSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/confusionIndex.html b/reference/confusionIndex.html index 21a58549..1c32c229 100644 --- a/reference/confusionIndex.html +++ b/reference/confusionIndex.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/contrastChart.html b/reference/contrastChart.html index e6733ed5..8a1bb00e 100644 --- a/reference/contrastChart.html +++ b/reference/contrastChart.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/contrastClass.html b/reference/contrastClass.html index 49a48f0f..e18bd18b 100644 --- a/reference/contrastClass.html +++ b/reference/contrastClass.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/correctAWC.html b/reference/correctAWC.html index dcbd0dd5..6803ed7f 100644 --- a/reference/correctAWC.html +++ b/reference/correctAWC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/crit.clay.argillic.html b/reference/crit.clay.argillic.html index 12922e88..4af74bbd 100644 --- a/reference/crit.clay.argillic.html +++ b/reference/crit.clay.argillic.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/denormalize.html b/reference/denormalize.html index 7125b72f..ca310920 100644 --- a/reference/denormalize.html +++ b/reference/denormalize.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/depthOf.html b/reference/depthOf.html index 24fb15a1..95164967 100644 --- a/reference/depthOf.html +++ b/reference/depthOf.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/depthWeights.html b/reference/depthWeights.html index b41e28ea..93ca2230 100644 --- a/reference/depthWeights.html +++ b/reference/depthWeights.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/depth_units.html b/reference/depth_units.html index fd70f589..4439d0e4 100644 --- a/reference/depth_units.html +++ b/reference/depth_units.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/depths.html b/reference/depths.html index d2cfe9c5..4be892c2 100644 --- a/reference/depths.html +++ b/reference/depths.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/diagnostic_hz.html b/reference/diagnostic_hz.html index 8deae03b..ed0cb140 100644 --- a/reference/diagnostic_hz.html +++ b/reference/diagnostic_hz.html @@ -24,7 +24,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/dice-SoilProfileCollection-method.html b/reference/dice-SoilProfileCollection-method.html index 41dde3a3..0b87ab4d 100644 --- a/reference/dice-SoilProfileCollection-method.html +++ b/reference/dice-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/dollarsign-set.html b/reference/dollarsign-set.html index a149ae76..70cd6757 100644 --- a/reference/dollarsign-set.html +++ b/reference/dollarsign-set.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/dollarsign.html b/reference/dollarsign.html index b3e075af..7fda264a 100644 --- a/reference/dollarsign.html +++ b/reference/dollarsign.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/doublebracket-set.html b/reference/doublebracket-set.html index a2ba10dc..baa5399e 100644 --- a/reference/doublebracket-set.html +++ b/reference/doublebracket-set.html @@ -23,7 +23,7 @@ aqp - 2.0.4 + 2.1.0 @@ -93,7 +93,7 @@

Add or change column of horizon or site data in a SoilProfileCollection

- 
# S4 method for class 'SoilProfileCollection,ANY,ANY'
+    
# S4 method for class 'SoilProfileCollection'
 x[[i]] <- value
diff --git a/reference/doublebracket.html b/reference/doublebracket.html index c670d1ee..b7248da5 100644 --- a/reference/doublebracket.html +++ b/reference/doublebracket.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0
@@ -83,7 +83,7 @@

Get column of horizon or site data in a SoilProfileCollection

- 
# S4 method for class 'SoilProfileCollection,ANY,ANY'
+    
# S4 method for class 'SoilProfileCollection'
 x[[i, j]]
diff --git a/reference/duplicate.html b/reference/duplicate.html index 41bff946..7c47506b 100644 --- a/reference/duplicate.html +++ b/reference/duplicate.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0
diff --git a/reference/electroStatics_1D.html b/reference/electroStatics_1D.html index 27df053e..a99b55ae 100644 --- a/reference/electroStatics_1D.html +++ b/reference/electroStatics_1D.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/equivalentMunsellChips.html b/reference/equivalentMunsellChips.html index 01186c1c..2616a24b 100644 --- a/reference/equivalentMunsellChips.html +++ b/reference/equivalentMunsellChips.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/equivalent_munsell.html b/reference/equivalent_munsell.html index e23e77d2..e73d3afe 100644 --- a/reference/equivalent_munsell.html +++ b/reference/equivalent_munsell.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/estimateAWC.html b/reference/estimateAWC.html index d76b20b7..b392422d 100644 --- a/reference/estimateAWC.html +++ b/reference/estimateAWC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/estimatePSCS.html b/reference/estimatePSCS.html index d27bd705..a049dce5 100644 --- a/reference/estimatePSCS.html +++ b/reference/estimatePSCS.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/estimateSoilColor.html b/reference/estimateSoilColor.html index b462cde6..4c091721 100644 --- a/reference/estimateSoilColor.html +++ b/reference/estimateSoilColor.html @@ -23,7 +23,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/estimateSoilDepth.html b/reference/estimateSoilDepth.html index 039a4272..6141eb65 100644 --- a/reference/estimateSoilDepth.html +++ b/reference/estimateSoilDepth.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/evalGenHZ.html b/reference/evalGenHZ.html index 3a77b51d..0dab26a3 100644 --- a/reference/evalGenHZ.html +++ b/reference/evalGenHZ.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/evalMissingData.html b/reference/evalMissingData.html index 14ee9569..4fe8ff52 100644 --- a/reference/evalMissingData.html +++ b/reference/evalMissingData.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/explainPlotSPC.html b/reference/explainPlotSPC.html index 8abe04fe..fdd9f8cf 100644 --- a/reference/explainPlotSPC.html +++ b/reference/explainPlotSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/fillHzGaps.html b/reference/fillHzGaps.html index fa0821fa..36b0d243 100644 --- a/reference/fillHzGaps.html +++ b/reference/fillHzGaps.html @@ -22,7 +22,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/fixOverlap.html b/reference/fixOverlap.html index 82ddf388..9372f885 100644 --- a/reference/fixOverlap.html +++ b/reference/fixOverlap.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/flagOverlappingHz.html b/reference/flagOverlappingHz.html index d21e85de..5a981aa0 100644 --- a/reference/flagOverlappingHz.html +++ b/reference/flagOverlappingHz.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/fragmentClasses.html b/reference/fragmentClasses.html index a897b014..173a52e4 100644 --- a/reference/fragmentClasses.html +++ b/reference/fragmentClasses.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/fragmentSieve.html b/reference/fragmentSieve.html index 318f28b0..2d4b9119 100644 --- a/reference/fragmentSieve.html +++ b/reference/fragmentSieve.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/genSlabLabels.html b/reference/genSlabLabels.html index 8560ee85..455b9d39 100644 --- a/reference/genSlabLabels.html +++ b/reference/genSlabLabels.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/generalize.hz.html b/reference/generalize.hz.html index 36298360..4a225a21 100644 --- a/reference/generalize.hz.html +++ b/reference/generalize.hz.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/genhzTableToAdjMat.html b/reference/genhzTableToAdjMat.html index ab398b75..0a4b166e 100644 --- a/reference/genhzTableToAdjMat.html +++ b/reference/genhzTableToAdjMat.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/get.increase.matrix.html b/reference/get.increase.matrix.html index 5c819400..2bc86c4a 100644 --- a/reference/get.increase.matrix.html +++ b/reference/get.increase.matrix.html @@ -21,7 +21,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/get.ml.hz.html b/reference/get.ml.hz.html index b048dc27..aeb278dd 100644 --- a/reference/get.ml.hz.html +++ b/reference/get.ml.hz.html @@ -21,7 +21,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getArgillicBounds.html b/reference/getArgillicBounds.html index 655a59b7..9d78d5af 100644 --- a/reference/getArgillicBounds.html +++ b/reference/getArgillicBounds.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getCambicBounds.html b/reference/getCambicBounds.html index d020408d..932c89ef 100644 --- a/reference/getCambicBounds.html +++ b/reference/getCambicBounds.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getClosestMunsellChip.html b/reference/getClosestMunsellChip.html index 52ec2065..75c101be 100644 --- a/reference/getClosestMunsellChip.html +++ b/reference/getClosestMunsellChip.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getLastHorizonID.html b/reference/getLastHorizonID.html index 670e6eab..0b192060 100644 --- a/reference/getLastHorizonID.html +++ b/reference/getLastHorizonID.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getSoilDepthClass.html b/reference/getSoilDepthClass.html index d6fe14a2..73fed202 100644 --- a/reference/getSoilDepthClass.html +++ b/reference/getSoilDepthClass.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/getSurfaceHorizonDepth.html b/reference/getSurfaceHorizonDepth.html index a63ed41c..13dc86a0 100644 --- a/reference/getSurfaceHorizonDepth.html +++ b/reference/getSurfaceHorizonDepth.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/glom.html b/reference/glom.html index 8b25c219..eee4d8fc 100644 --- a/reference/glom.html +++ b/reference/glom.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/glomApply.html b/reference/glomApply.html index a5e522ed..11e89ef0 100644 --- a/reference/glomApply.html +++ b/reference/glomApply.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/grepSPC.html b/reference/grepSPC.html index 00543b36..1b471061 100644 --- a/reference/grepSPC.html +++ b/reference/grepSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/groupSPC.html b/reference/groupSPC.html index 651a06d2..010d793b 100644 --- a/reference/groupSPC.html +++ b/reference/groupSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/groupedProfilePlot.html b/reference/groupedProfilePlot.html index 3b9081b6..b84469b0 100644 --- a/reference/groupedProfilePlot.html +++ b/reference/groupedProfilePlot.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/guessGenHzLevels.html b/reference/guessGenHzLevels.html index 72286c25..312c1ea8 100644 --- a/reference/guessGenHzLevels.html +++ b/reference/guessGenHzLevels.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/guessHzAttrName.html b/reference/guessHzAttrName.html index b26fcf19..eb4ee58c 100644 --- a/reference/guessHzAttrName.html +++ b/reference/guessHzAttrName.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/harden.melanization.html b/reference/harden.melanization.html index 5870642f..2924874c 100644 --- a/reference/harden.melanization.html +++ b/reference/harden.melanization.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/harden.rubification.html b/reference/harden.rubification.html index bc6a3d78..1e5e78b1 100644 --- a/reference/harden.rubification.html +++ b/reference/harden.rubification.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/harmonize-SoilProfileCollection-method.html b/reference/harmonize-SoilProfileCollection-method.html index 44565919..1dfc03a6 100644 --- a/reference/harmonize-SoilProfileCollection-method.html +++ b/reference/harmonize-SoilProfileCollection-method.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hasDarkColors.html b/reference/hasDarkColors.html index 27438990..3a6b75c2 100644 --- a/reference/hasDarkColors.html +++ b/reference/hasDarkColors.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/horizonColorIndices.html b/reference/horizonColorIndices.html index 9770d17e..d98af7fa 100644 --- a/reference/horizonColorIndices.html +++ b/reference/horizonColorIndices.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/horizonDepths.html b/reference/horizonDepths.html index d836e212..be5b4b1d 100644 --- a/reference/horizonDepths.html +++ b/reference/horizonDepths.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/horizonNames.html b/reference/horizonNames.html index a262702d..61be72bb 100644 --- a/reference/horizonNames.html +++ b/reference/horizonNames.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/horizons.html b/reference/horizons.html index eac6218c..1f722add 100644 --- a/reference/horizons.html +++ b/reference/horizons.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/huePosition.html b/reference/huePosition.html index 3dab8672..480bfcc7 100644 --- a/reference/huePosition.html +++ b/reference/huePosition.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/huePositionCircle.html b/reference/huePositionCircle.html index 88b4c7bf..ac91ab30 100644 --- a/reference/huePositionCircle.html +++ b/reference/huePositionCircle.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hurst.redness.html b/reference/hurst.redness.html index 68130cd9..fb5f544f 100644 --- a/reference/hurst.redness.html +++ b/reference/hurst.redness.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzDepthTests.html b/reference/hzDepthTests.html index bed1197f..343ebdd5 100644 --- a/reference/hzDepthTests.html +++ b/reference/hzDepthTests.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzDesgn.html b/reference/hzDesgn.html index 89a7c026..33eb5766 100644 --- a/reference/hzDesgn.html +++ b/reference/hzDesgn.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzDistinctnessCodeToOffset.html b/reference/hzDistinctnessCodeToOffset.html index ab579b37..163f4a7a 100644 --- a/reference/hzDistinctnessCodeToOffset.html +++ b/reference/hzDistinctnessCodeToOffset.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzID.html b/reference/hzID.html index 9ff25b5a..2e3d4152 100644 --- a/reference/hzID.html +++ b/reference/hzID.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzMetadata.html b/reference/hzMetadata.html index 0f969f4e..8f7be5aa 100644 --- a/reference/hzMetadata.html +++ b/reference/hzMetadata.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzOffset.html b/reference/hzOffset.html index d06515db..02695764 100644 --- a/reference/hzOffset.html +++ b/reference/hzOffset.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzTopographyCodeToLineType.html b/reference/hzTopographyCodeToLineType.html index 2d1e86f8..c69bede7 100644 --- a/reference/hzTopographyCodeToLineType.html +++ b/reference/hzTopographyCodeToLineType.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzTopographyCodeToOffset.html b/reference/hzTopographyCodeToOffset.html index b31544ba..6d67a6fe 100644 --- a/reference/hzTopographyCodeToOffset.html +++ b/reference/hzTopographyCodeToOffset.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzTransitionProbabilities.html b/reference/hzTransitionProbabilities.html index 0a7bd392..aa2f3c90 100644 --- a/reference/hzTransitionProbabilities.html +++ b/reference/hzTransitionProbabilities.html @@ -23,7 +23,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hz_dissolve.html b/reference/hz_dissolve.html index d08df276..799532e7 100644 --- a/reference/hz_dissolve.html +++ b/reference/hz_dissolve.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hz_intersect.html b/reference/hz_intersect.html index 3bdaf5aa..dbb9fbf4 100644 --- a/reference/hz_intersect.html +++ b/reference/hz_intersect.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hz_lag.html b/reference/hz_lag.html index bfa34f18..e43e1b42 100644 --- a/reference/hz_lag.html +++ b/reference/hz_lag.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hz_segment.html b/reference/hz_segment.html index 02c79b76..2efcad4d 100644 --- a/reference/hz_segment.html +++ b/reference/hz_segment.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hz_to_taxpartsize.html b/reference/hz_to_taxpartsize.html index 08cb14c3..980836b6 100644 --- a/reference/hz_to_taxpartsize.html +++ b/reference/hz_to_taxpartsize.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzdesgnname.html b/reference/hzdesgnname.html index fbad46e8..68230505 100644 --- a/reference/hzdesgnname.html +++ b/reference/hzdesgnname.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzidname.html b/reference/hzidname.html index 1039e7af..b7bc8446 100644 --- a/reference/hzidname.html +++ b/reference/hzidname.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hzmetaname.html b/reference/hzmetaname.html index 4a0dd955..128d66a8 100644 --- a/reference/hzmetaname.html +++ b/reference/hzmetaname.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/hztexclname.html b/reference/hztexclname.html index 2532a1ed..c2a5ba04 100644 --- a/reference/hztexclname.html +++ b/reference/hztexclname.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/idname.html b/reference/idname.html index f853a418..0a1dfc9f 100644 --- a/reference/idname.html +++ b/reference/idname.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/index.html b/reference/index.html index c31c4b24..58585bf9 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 @@ -111,11 +111,11 @@

All functions

An S4 object representation of a group of soil profiles.

-

prj(<SoilProfileCollection>) `prj<-`(<SoilProfileCollection>) proj4string(<SoilProfileCollection>) `proj4string<-`(<SoilProfileCollection>,<ANY>)

+

prj(<SoilProfileCollection>) `prj<-`(<SoilProfileCollection>) proj4string(<SoilProfileCollection>) `proj4string<-`(<SoilProfileCollection>)

Get or Set Coordinate Reference System for SoilProfileCollection

-

plotSPC() plot(<SoilProfileCollection>,<ANY>)

+

plotSPC() plot(<SoilProfileCollection>)

Create Soil Profile Sketches

@@ -287,11 +287,11 @@

All functions

Get data from column of horizon or site data in a SoilProfileCollection

-

`[[<-`(<SoilProfileCollection>,<ANY>,<ANY>)

+

`[[<-`(<SoilProfileCollection>)

Add or change column of horizon or site data in a SoilProfileCollection

-

`[[`(<SoilProfileCollection>,<ANY>,<ANY>)

+

`[[`(<SoilProfileCollection>)

Get column of horizon or site data in a SoilProfileCollection

diff --git a/reference/initSpatial.html b/reference/initSpatial.html index 00e64869..406c8419 100644 --- a/reference/initSpatial.html +++ b/reference/initSpatial.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/invertLabelColor.html b/reference/invertLabelColor.html index 65cb32e7..8f88f3b1 100644 --- a/reference/invertLabelColor.html +++ b/reference/invertLabelColor.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/isEmpty.html b/reference/isEmpty.html index 515fda29..650e0c84 100644 --- a/reference/isEmpty.html +++ b/reference/isEmpty.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/jacobs2000.html b/reference/jacobs2000.html index 2228560b..fa086120 100644 --- a/reference/jacobs2000.html +++ b/reference/jacobs2000.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/length.html b/reference/length.html index 4a83c9fe..48c154d3 100644 --- a/reference/length.html +++ b/reference/length.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/lookup_taxpartsize.html b/reference/lookup_taxpartsize.html index 3f314ccc..01151b4d 100644 --- a/reference/lookup_taxpartsize.html +++ b/reference/lookup_taxpartsize.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/lunique.html b/reference/lunique.html index cbc6ea11..3815a99b 100644 --- a/reference/lunique.html +++ b/reference/lunique.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/max.html b/reference/max.html index d7c16552..85cb03b3 100644 --- a/reference/max.html +++ b/reference/max.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/metadata.html b/reference/metadata.html index 16f59051..3ad3a463 100644 --- a/reference/metadata.html +++ b/reference/metadata.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/min.html b/reference/min.html index 04a232c2..6322f85d 100644 --- a/reference/min.html +++ b/reference/min.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/missingDataGrid.html b/reference/missingDataGrid.html index 84b191a7..d90ad64d 100644 --- a/reference/missingDataGrid.html +++ b/reference/missingDataGrid.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/mixMunsell.html b/reference/mixMunsell.html index da11009e..07526bfa 100644 --- a/reference/mixMunsell.html +++ b/reference/mixMunsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/mollic.thickness.requirement.html b/reference/mollic.thickness.requirement.html index dce3cce1..aa974a8d 100644 --- a/reference/mollic.thickness.requirement.html +++ b/reference/mollic.thickness.requirement.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/munsell.html b/reference/munsell.html index fb5c3579..31022f79 100644 --- a/reference/munsell.html +++ b/reference/munsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/munsell.spectra.html b/reference/munsell.spectra.html index 14d88a91..8513702d 100644 --- a/reference/munsell.spectra.html +++ b/reference/munsell.spectra.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/munsell2rgb.html b/reference/munsell2rgb.html index 5e8f8b07..209a2107 100644 --- a/reference/munsell2rgb.html +++ b/reference/munsell2rgb.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/munsell2spc-SoilProfileCollection-method.html b/reference/munsell2spc-SoilProfileCollection-method.html index 6761283c..5cb8aa27 100644 --- a/reference/munsell2spc-SoilProfileCollection-method.html +++ b/reference/munsell2spc-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/munsellHuePosition.html b/reference/munsellHuePosition.html index 995fd6cb..ee1a5789 100644 --- a/reference/munsellHuePosition.html +++ b/reference/munsellHuePosition.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/mutate_profile.html b/reference/mutate_profile.html index a4b47fb9..c8890efb 100644 --- a/reference/mutate_profile.html +++ b/reference/mutate_profile.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/names.html b/reference/names.html index ada54042..822e19ee 100644 --- a/reference/names.html +++ b/reference/names.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/nrow.html b/reference/nrow.html index 5c58862b..3bce5125 100644 --- a/reference/nrow.html +++ b/reference/nrow.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/osd.html b/reference/osd.html index d6098fe4..1cfb17d1 100644 --- a/reference/osd.html +++ b/reference/osd.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/overlapMetrics.html b/reference/overlapMetrics.html index 0f7044bb..0c7a7ae6 100644 --- a/reference/overlapMetrics.html +++ b/reference/overlapMetrics.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/panel.depth_function.html b/reference/panel.depth_function.html index 8c50620c..760e325d 100644 --- a/reference/panel.depth_function.html +++ b/reference/panel.depth_function.html @@ -23,7 +23,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/parseMunsell.html b/reference/parseMunsell.html index f3235445..6f8cc4a1 100644 --- a/reference/parseMunsell.html +++ b/reference/parseMunsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/pbindlist.html b/reference/pbindlist.html index c2778313..ac6f027d 100644 --- a/reference/pbindlist.html +++ b/reference/pbindlist.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/perturb.html b/reference/perturb.html index ba472c57..ae7c3e39 100644 --- a/reference/perturb.html +++ b/reference/perturb.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/plotColorMixture.html b/reference/plotColorMixture.html index a1cdef30..d1e9d6b3 100644 --- a/reference/plotColorMixture.html +++ b/reference/plotColorMixture.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/plotColorQuantiles.html b/reference/plotColorQuantiles.html index 83600a52..918f0de5 100644 --- a/reference/plotColorQuantiles.html +++ b/reference/plotColorQuantiles.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/plotMultipleSPC.html b/reference/plotMultipleSPC.html index 4f2089a4..2d0a0052 100644 --- a/reference/plotMultipleSPC.html +++ b/reference/plotMultipleSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/plot_distance_graph.html b/reference/plot_distance_graph.html index 35ccf8cf..9f48ae55 100644 --- a/reference/plot_distance_graph.html +++ b/reference/plot_distance_graph.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/previewColors.html b/reference/previewColors.html index ea72063b..dda3ebc6 100644 --- a/reference/previewColors.html +++ b/reference/previewColors.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/profileApply.html b/reference/profileApply.html index 44ec6e44..1bb9f073 100644 --- a/reference/profileApply.html +++ b/reference/profileApply.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/profileGroupLabels.html b/reference/profileGroupLabels.html index e37ec14b..06cc42a0 100644 --- a/reference/profileGroupLabels.html +++ b/reference/profileGroupLabels.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/profileInformationIndex.html b/reference/profileInformationIndex.html index f78cbce9..f84f6dcc 100644 --- a/reference/profileInformationIndex.html +++ b/reference/profileInformationIndex.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/profile_compare.html b/reference/profile_compare.html index b0bf5a51..92f2f723 100644 --- a/reference/profile_compare.html +++ b/reference/profile_compare.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/profile_id.html b/reference/profile_id.html index b1f72f31..cd668f27 100644 --- a/reference/profile_id.html +++ b/reference/profile_id.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/quickSPC.html b/reference/quickSPC.html index ad42ac48..f262b669 100644 --- a/reference/quickSPC.html +++ b/reference/quickSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/random_profile.html b/reference/random_profile.html index e4b10975..04061005 100644 --- a/reference/random_profile.html +++ b/reference/random_profile.html @@ -33,7 +33,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/reaction.html b/reference/reaction.html index f0e18e45..92b47bb0 100644 --- a/reference/reaction.html +++ b/reference/reaction.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/reactionclass.html b/reference/reactionclass.html index 941c7a12..7225530e 100644 --- a/reference/reactionclass.html +++ b/reference/reactionclass.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/rebuildSPC.html b/reference/rebuildSPC.html index b47e01d0..6d18f921 100644 --- a/reference/rebuildSPC.html +++ b/reference/rebuildSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/reduceSPC.html b/reference/reduceSPC.html index 1b42dc81..5cf536a0 100644 --- a/reference/reduceSPC.html +++ b/reference/reduceSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/reorderHorizons.html b/reference/reorderHorizons.html index 744f90ee..c0f452aa 100644 --- a/reference/reorderHorizons.html +++ b/reference/reorderHorizons.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/repairMissingHzDepths.html b/reference/repairMissingHzDepths.html index 768ddd66..11b9c54d 100644 --- a/reference/repairMissingHzDepths.html +++ b/reference/repairMissingHzDepths.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/replaceHorizons.html b/reference/replaceHorizons.html index 13cf1930..b20093ba 100644 --- a/reference/replaceHorizons.html +++ b/reference/replaceHorizons.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/restrictions.html b/reference/restrictions.html index 5add7e7e..22221b76 100644 --- a/reference/restrictions.html +++ b/reference/restrictions.html @@ -24,7 +24,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/rgb2munsell.html b/reference/rgb2munsell.html index 1adf7754..6291ff5b 100644 --- a/reference/rgb2munsell.html +++ b/reference/rgb2munsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/rowley2019.html b/reference/rowley2019.html index 1caee024..d630d628 100644 --- a/reference/rowley2019.html +++ b/reference/rowley2019.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/shannonEntropy.html b/reference/shannonEntropy.html index b2f8c839..30e41d26 100644 --- a/reference/shannonEntropy.html +++ b/reference/shannonEntropy.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/show.html b/reference/show.html index b3be3397..c58add9e 100644 --- a/reference/show.html +++ b/reference/show.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sierraTransect.html b/reference/sierraTransect.html index f6a8f652..7fc60e5d 100644 --- a/reference/sierraTransect.html +++ b/reference/sierraTransect.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sim.html b/reference/sim.html index ad354857..76454722 100644 --- a/reference/sim.html +++ b/reference/sim.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/simulateColor.html b/reference/simulateColor.html index a41395dc..1d451a79 100644 --- a/reference/simulateColor.html +++ b/reference/simulateColor.html @@ -22,7 +22,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/singlebracket.html b/reference/singlebracket.html index 03104a74..ce8738f4 100644 --- a/reference/singlebracket.html +++ b/reference/singlebracket.html @@ -27,7 +27,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/site.html b/reference/site.html index 9840b710..5164bde7 100644 --- a/reference/site.html +++ b/reference/site.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/siteNames.html b/reference/siteNames.html index 7f9d6a23..4d8f78b7 100644 --- a/reference/siteNames.html +++ b/reference/siteNames.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/slab.html b/reference/slab.html index 168d436f..9b253ede 100644 --- a/reference/slab.html +++ b/reference/slab.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/slice.html b/reference/slice.html index a26dd0a4..e964d657 100644 --- a/reference/slice.html +++ b/reference/slice.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/slicedHSD.html b/reference/slicedHSD.html index 61376f8b..19f0344a 100644 --- a/reference/slicedHSD.html +++ b/reference/slicedHSD.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/soilColorSignature.html b/reference/soilColorSignature.html index 370aa62b..4499aff2 100644 --- a/reference/soilColorSignature.html +++ b/reference/soilColorSignature.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/soilPalette.html b/reference/soilPalette.html index 9f3dbfc1..ba680350 100644 --- a/reference/soilPalette.html +++ b/reference/soilPalette.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/soilTextureColorPal.html b/reference/soilTextureColorPal.html index 25246917..344e9245 100644 --- a/reference/soilTextureColorPal.html +++ b/reference/soilTextureColorPal.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/soil_minerals.html b/reference/soil_minerals.html index 5352889a..c000ede4 100644 --- a/reference/soil_minerals.html +++ b/reference/soil_minerals.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/soiltexture.html b/reference/soiltexture.html index fc2b35ce..27c5bbdf 100644 --- a/reference/soiltexture.html +++ b/reference/soiltexture.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sp1.html b/reference/sp1.html index 1f3a2651..757a2b9b 100644 --- a/reference/sp1.html +++ b/reference/sp1.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sp2.html b/reference/sp2.html index c3735656..878c812a 100644 --- a/reference/sp2.html +++ b/reference/sp2.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sp3.html b/reference/sp3.html index 7a9030f1..cea6a829 100644 --- a/reference/sp3.html +++ b/reference/sp3.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sp4.html b/reference/sp4.html index 2d39eca2..dc5cc5ef 100644 --- a/reference/sp4.html +++ b/reference/sp4.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 @@ -170,7 +170,7 @@

Examples

#> attr(,"package") #> [1] "aqp" str(sp4) # internal structure -#> Formal class 'SoilProfileCollection' [package "aqp"] with 9 slots +#> Formal class 'SoilProfileCollection' [package "aqp"] with 8 slots #> ..@ idcol : chr "id" #> ..@ hzidcol : chr "hzID" #> ..@ depthcols : chr [1:2] "top" "bottom" @@ -199,11 +199,6 @@

Examples

#> .. ..$ hzID : chr [1:30] "1" "2" "3" "4" ... #> ..@ site :'data.frame': 10 obs. of 1 variable: #> .. ..$ id: chr [1:10] "colusa" "glenn" "kings" "mariposa" ... -#> ..@ sp :Formal class 'SpatialPoints' [package "sp"] with 3 slots -#> .. .. ..@ coords : num [1, 1] 0 -#> .. .. ..@ bbox : logi [1, 1] NA -#> .. .. ..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slot -#> .. .. .. .. ..@ projargs: chr NA #> ..@ diagnostic :'data.frame': 0 obs. of 0 variables #> ..@ restrictions:'data.frame': 0 obs. of 0 variables diff --git a/reference/sp5.html b/reference/sp5.html index 9590928f..bf58ef0e 100644 --- a/reference/sp5.html +++ b/reference/sp5.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/sp6.html b/reference/sp6.html index 7472bdf7..e1b7706a 100644 --- a/reference/sp6.html +++ b/reference/sp6.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/spc2mpspline-SoilProfileCollection-method.html b/reference/spc2mpspline-SoilProfileCollection-method.html index b03be216..b67279b2 100644 --- a/reference/spc2mpspline-SoilProfileCollection-method.html +++ b/reference/spc2mpspline-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/spc_in_sync.html b/reference/spc_in_sync.html index ab14be2d..06271fb9 100644 --- a/reference/spc_in_sync.html +++ b/reference/spc_in_sync.html @@ -20,7 +20,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/spec2Munsell.html b/reference/spec2Munsell.html index e2697039..fa01479d 100644 --- a/reference/spec2Munsell.html +++ b/reference/spec2Munsell.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/spectral.reference.html b/reference/spectral.reference.html index fc12983d..575c897a 100644 --- a/reference/spectral.reference.html +++ b/reference/spectral.reference.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/split-SoilProfileCollection-method.html b/reference/split-SoilProfileCollection-method.html index 8a710732..8861eb0b 100644 --- a/reference/split-SoilProfileCollection-method.html +++ b/reference/split-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/splitLogicErrors.html b/reference/splitLogicErrors.html index 49de5e1f..fba1a1bc 100644 --- a/reference/splitLogicErrors.html +++ b/reference/splitLogicErrors.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/subApply.html b/reference/subApply.html index e260f08f..355021f5 100644 --- a/reference/subApply.html +++ b/reference/subApply.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/subset-SoilProfileCollection-method.html b/reference/subset-SoilProfileCollection-method.html index acd1d8e7..00d1c3b9 100644 --- a/reference/subset-SoilProfileCollection-method.html +++ b/reference/subset-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/subsetHz-SoilProfileCollection-method.html b/reference/subsetHz-SoilProfileCollection-method.html index 6c211ab3..3dc8683c 100644 --- a/reference/subsetHz-SoilProfileCollection-method.html +++ b/reference/subsetHz-SoilProfileCollection-method.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/subsetProfiles.html b/reference/subsetProfiles.html index 897f05c9..f8e32432 100644 --- a/reference/subsetProfiles.html +++ b/reference/subsetProfiles.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/summarizeSPC.html b/reference/summarizeSPC.html index 90244301..035c6325 100644 --- a/reference/summarizeSPC.html +++ b/reference/summarizeSPC.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/tauW.html b/reference/tauW.html index 9464ed8d..1ecc16f9 100644 --- a/reference/tauW.html +++ b/reference/tauW.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/texture.html b/reference/texture.html index e8db90a9..22fc2199 100644 --- a/reference/texture.html +++ b/reference/texture.html @@ -19,7 +19,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/textureTriangleSummary.html b/reference/textureTriangleSummary.html index cea9b29c..3d12b1ce 100644 --- a/reference/textureTriangleSummary.html +++ b/reference/textureTriangleSummary.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/thicknessOf.html b/reference/thicknessOf.html index cc8eb9b2..b64626a1 100644 --- a/reference/thicknessOf.html +++ b/reference/thicknessOf.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/thompson.bell.darkness.html b/reference/thompson.bell.darkness.html index 7627619b..202e674a 100644 --- a/reference/thompson.bell.darkness.html +++ b/reference/thompson.bell.darkness.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/traditionalColorNames.html b/reference/traditionalColorNames.html index 5fc0e4ce..3ac8f58d 100644 --- a/reference/traditionalColorNames.html +++ b/reference/traditionalColorNames.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/transform.html b/reference/transform.html index 564f1981..53ad9793 100644 --- a/reference/transform.html +++ b/reference/transform.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/unique.html b/reference/unique.html index 555bf5ca..f57c9076 100644 --- a/reference/unique.html +++ b/reference/unique.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/unroll.html b/reference/unroll.html index ae19bf2a..4b20be9b 100644 --- a/reference/unroll.html +++ b/reference/unroll.html @@ -18,7 +18,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/us.state.soils.html b/reference/us.state.soils.html index ce5914b0..807bf9a7 100644 --- a/reference/us.state.soils.html +++ b/reference/us.state.soils.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/validSpatialData.html b/reference/validSpatialData.html index ff2daaf5..b0cc41fe 100644 --- a/reference/validSpatialData.html +++ b/reference/validSpatialData.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/warpHorizons.html b/reference/warpHorizons.html index 7fa426b3..fe09ad43 100644 --- a/reference/warpHorizons.html +++ b/reference/warpHorizons.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/wilson2022.html b/reference/wilson2022.html index 735741bd..6f139f9f 100644 --- a/reference/wilson2022.html +++ b/reference/wilson2022.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0 diff --git a/reference/xtableTauW.html b/reference/xtableTauW.html index 90df72f7..70084c2b 100644 --- a/reference/xtableTauW.html +++ b/reference/xtableTauW.html @@ -17,7 +17,7 @@ aqp - 2.0.4 + 2.1.0