Update README/NEWS

ncss-tech · Dec 14, 2021 · 9939e33 · 9939e33
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diff --git a/NEWS.md b/NEWS.md
@@ -1,9 +1,10 @@
-# soilDB 2.6.10 (2021-12-13)
+# soilDB 2.6.10 (2021-12-14)
  * `waterDayYear()` and `.formatDates()` allow optional `format` and `tz` argument; used for consistent POSIX time conversion in tests where date/time has granularity finer than one day
  * `fetchSDA()` extensions for better handling of components with no horizon data
  * `SDA_spatialQuery()` and `processSDA_WKT()` fully use {sf}, replacing {sp} in these contexts
  * `SDA_spatialQuery()` gains argument `byFeature` to use multiple single-feature queries and combine the results with a unique feature ID specified by `idcol` argument. This allows for specific feature intersection results without secondary spatial overlay of the polygons (https://github.com/ncss-tech/soilDB/issues/222)
-
+ * `dbConnectNASIS()` no longer requires that the NASIS credentials option be set if the `dsn` argument is specified.
+
 # soilDB 2.6.9 (2021-12-02)
  * Replaced functionality using {plyr}/{reshape2} with {base}/{data.table}
  * `processSDA_WKT()`: replaced {rgeos} with {wk} and {sf}

diff --git a/README.Rmd b/README.Rmd
@@ -72,64 +72,65 @@ Dylan Beaudette, Jay Skovlin, Stephen Roecker and Andrew Brown (2021). soilDB: S
 ## Functions by Data Source 
 
   * SDA
-    + [`fetchSDA`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSDA_component.html)
-    + [`fetchSDA_spatial`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSDA_spatial.html)
-    + [`SDA_query`](http://ncss-tech.github.io/soilDB/docs/reference/SDA_query.html)
-    + [`SDA_spatialQuery`](http://ncss-tech.github.io/soilDB/docs/reference/SDA_spatialQuery.html)
+    + [`fetchSDA`](http://ncss-tech.github.io/soilDB/reference/fetchSDA_component.html)
+    + [`fetchSDA_spatial`](http://ncss-tech.github.io/soilDB/reference/fetchSDA_spatial.html)
+    + [`SDA_query`](http://ncss-tech.github.io/soilDB/reference/SDA_query.html)
+    + [`SDA_spatialQuery`](http://ncss-tech.github.io/soilDB/reference/SDA_spatialQuery.html)
     + "SSURGO On Demand" Queries
-      - [`get_SDA_hydric`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_hydric.html)
-      - [`get_SDA_interpretation`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_interpretation.html)
-      - [`get_SDA_muaggatt`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_muaggatt.html)
-      - [`get_SDA_pmgroupname`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_pmgroupname.html)
-      - [`get_SDA_property`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_property.html)
+      - [`get_SDA_hydric`](http://ncss-tech.github.io/soilDB/reference/get_SDA_hydric.html)
+      - [`get_SDA_interpretation`](http://ncss-tech.github.io/soilDB/reference/get_SDA_interpretation.html)
+      - [`get_SDA_muaggatt`](http://ncss-tech.github.io/soilDB/reference/get_SDA_muaggatt.html)
+      - [`get_SDA_pmgroupname`](http://ncss-tech.github.io/soilDB/reference/get_SDA_pmgroupname.html)
+      - [`get_SDA_property`](http://ncss-tech.github.io/soilDB/reference/get_SDA_property.html)
+      - [`get_SDA_coecosite`](http://ncss-tech.github.io/soilDB/reference/get_SDA_coecosite.html)
 
   * SSURGO Local Geodatabases
-    + [`fetchGDB`](http://ncss-tech.github.io/soilDB/docs/reference/fetchGDB.html)
+    + [`fetchGDB`](http://ncss-tech.github.io/soilDB/reference/fetchGDB.html)
 
   * ROSETTA
-    + [`ROSETTA`](http://ncss-tech.github.io/soilDB/docs/reference/ROSETTA.html)
+    + [`ROSETTA`](http://ncss-tech.github.io/soilDB/reference/ROSETTA.html)
 
   * SSURGO/KSSL via SoilWeb
-    + [`fetchKSSL`](http://ncss-tech.github.io/soilDB/docs/reference/fetchKSSL.html)
-    + [`fetchOSD`](http://ncss-tech.github.io/soilDB/docs/reference/fetchOSD.html)
-    + [`siblings`](http://ncss-tech.github.io/soilDB/docs/reference/siblings.html)
-    + [`OSDquery`](http://ncss-tech.github.io/soilDB/docs/reference/OSDquery.html) 
-    + [`seriesExtent`](http://ncss-tech.github.io/soilDB/docs/reference/seriesExtent.html)
-    + [`taxaExtent`](http://ncss-tech.github.io/soilDB/docs/reference/taxaExtent.html)
-    + [`mukey.wcs`](http://ncss-tech.github.io/soilDB/docs/reference/mukey.wcs.html)
-    + [`ISSR800.wcs`](http://ncss-tech.github.io/soilDB/docs/reference/ISSR800.wcs.html)
+    + [`fetchKSSL`](http://ncss-tech.github.io/soilDB/reference/fetchKSSL.html)
+    + [`fetchOSD`](http://ncss-tech.github.io/soilDB/reference/fetchOSD.html)
+    + [`siblings`](http://ncss-tech.github.io/soilDB/reference/siblings.html)
+    + [`OSDquery`](http://ncss-tech.github.io/soilDB/reference/OSDquery.html) 
+    + [`seriesExtent`](http://ncss-tech.github.io/soilDB/reference/seriesExtent.html)
+    + [`taxaExtent`](http://ncss-tech.github.io/soilDB/reference/taxaExtent.html)
+    + [`mukey.wcs`](http://ncss-tech.github.io/soilDB/reference/mukey.wcs.html)
+    + [`ISSR800.wcs`](http://ncss-tech.github.io/soilDB/reference/ISSR800.wcs.html)
 
   * NASIS WWW interface
-    + [`parseWebReport`](http://ncss-tech.github.io/soilDB/docs/reference/parseWebReport.html)
-    + [`fetchNASISWebReport`](http://ncss-tech.github.io/soilDB/docs/reference/fetchNASISWebReport.html)
+    + [`parseWebReport`](http://ncss-tech.github.io/soilDB/reference/parseWebReport.html)
+    + [`fetchNASISWebReport`](http://ncss-tech.github.io/soilDB/reference/fetchNASISWebReport.html)
 
   * SCAN/SNOTEL
-    + [`fetchSCAN`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSCAN.html)
-    + [`SCAN_SNOTEL_metadata`](http://ncss-tech.github.io/soilDB/docs/reference/SCAN_SNOTEL_metadata.html)
+    + [`fetchSCAN`](http://ncss-tech.github.io/soilDB/reference/fetchSCAN.html)
+    + [`SCAN_SNOTEL_metadata`](http://ncss-tech.github.io/soilDB/reference/SCAN_SNOTEL_metadata.html)
 
   * Henry Mount Soil and Water Database
-    + [`fetchHenry`](http://ncss-tech.github.io/soilDB/docs/reference/fetchHenry.html)
+    + [`fetchHenry`](http://ncss-tech.github.io/soilDB/reference/fetchHenry.html)
 
   * NASIS local database
-    + [`fetchNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/fetchNASIS.html)
+    + [`fetchNASIS`](http://ncss-tech.github.io/soilDB/reference/fetchNASIS.html)
     + <span style="color:red">**NEW:**</span> Argument `dsn` to specify path to connect to alternate (SQLite) data sources with NASIS schema
-    + <span style="color:red">**NEW:**</span>[`dbConnectNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/dbConnectNASIS.html) (alias `NASIS`) - create a _DBIConnection_ to local NASIS database
-    + <span style="color:red">**NEW:**</span>[`dbQueryNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/dbQueryNASIS.html) - query NASIS local database (and close connection with `close=TRUE`)
-    + <span style="color:red">**NEW:**</span>[`createStaticNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/createStaticNASIS.html) - create list of NASIS tables or write to SQLite
+    + <span style="color:red">**NEW:**</span>[`dbConnectNASIS`](http://ncss-tech.github.io/soilDB/reference/dbConnectNASIS.html) (alias `NASIS()`) - create a _DBIConnection_ to local NASIS database
+    + <span style="color:red">**NEW:**</span>[`dbQueryNASIS`](http://ncss-tech.github.io/soilDB/reference/dbQueryNASIS.html) - query NASIS local database (and close connection with `close=TRUE`)
+    + <span style="color:red">**NEW:**</span>[`createStaticNASIS`](http://ncss-tech.github.io/soilDB/reference/createStaticNASIS.html) - create list of NASIS tables or write to SQLite
 
   * SoilGrids
-    + [`fetchSoilGrids`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSoilGrids.html)
+    + [`fetchSoilGrids`](http://ncss-tech.github.io/soilDB/reference/fetchSoilGrids.html)
 
 ## Miscellaneous Functions
 
-  * [`estimateSTR`](http://ncss-tech.github.io/soilDB/docs/reference/estimateSTR.html)
-  * [`STRplot`](http://ncss-tech.github.io/soilDB/docs/reference/STRplot.html)
-  * [`KSSL_VG_model`](http://ncss-tech.github.io/soilDB/docs/reference/KSSL_VG_model.html)
-  * [`simplfyFragmentData`](http://ncss-tech.github.io/soilDB/docs/reference/simplfyFragmentData.html)
-  * [`simplifyColorData`](http://ncss-tech.github.io/soilDB/docs/reference/simplifyColorData.html)
-  * [`uncode`](http://ncss-tech.github.io/soilDB/docs/reference/uncode.html)
-  * [`code`](http://ncss-tech.github.io/soilDB/docs/reference/code.html)
-  * [`get_NOAA_GHCND`](http://ncss-tech.github.io/soilDB/docs/reference/get_NOAA_GHCND.html)
+  * [`estimateSTR`](http://ncss-tech.github.io/soilDB/reference/estimateSTR.html)
+  * [`STRplot`](http://ncss-tech.github.io/soilDB/reference/STRplot.html)
+  * [`KSSL_VG_model`](http://ncss-tech.github.io/soilDB/reference/KSSL_VG_model.html)
+  * [`simplfyFragmentData`](http://ncss-tech.github.io/soilDB/reference/simplfyFragmentData.html)
+  * [`simplifyColorData`](http://ncss-tech.github.io/soilDB/reference/simplifyColorData.html)
+  * [`uncode`](http://ncss-tech.github.io/soilDB/reference/uncode.html)
+  * [`code`](http://ncss-tech.github.io/soilDB/reference/code.html)
+  * [`get_NOAA_GHCND`](http://ncss-tech.github.io/soilDB/reference/get_NOAA_GHCND.html)
 
 ## Tutorials and Demonstrations
 

diff --git a/README.md b/README.md
@@ -11,11 +11,11 @@ Manual](https://img.shields.io/badge/docs-HTML-informational)](https://ncss-tech
 
 ## Installation
 
-Get the stable version (2.6.9) from CRAN:
+Get the stable version from CRAN:
 
     install.packages('soilDB', dependencies = TRUE)
 
-Get the development version (2.6.10) from GitHub:
+Get the development version from GitHub:
 
     remotes::install_github("ncss-tech/soilDB", dependencies = FALSE, upgrade = FALSE, build = FALSE)
 
@@ -77,66 +77,67 @@ soilDB: Soil Database Interface. R package version 2.6.9.
 ## Functions by Data Source
 
 -   SDA
-    -   [`fetchSDA`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSDA_component.html)
-    -   [`fetchSDA_spatial`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSDA_spatial.html)
-    -   [`SDA_query`](http://ncss-tech.github.io/soilDB/docs/reference/SDA_query.html)
-    -   [`SDA_spatialQuery`](http://ncss-tech.github.io/soilDB/docs/reference/SDA_spatialQuery.html)
+    -   [`fetchSDA`](http://ncss-tech.github.io/soilDB/reference/fetchSDA_component.html)
+    -   [`fetchSDA_spatial`](http://ncss-tech.github.io/soilDB/reference/fetchSDA_spatial.html)
+    -   [`SDA_query`](http://ncss-tech.github.io/soilDB/reference/SDA_query.html)
+    -   [`SDA_spatialQuery`](http://ncss-tech.github.io/soilDB/reference/SDA_spatialQuery.html)
     -   “SSURGO On Demand” Queries
-        -   [`get_SDA_hydric`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_hydric.html)
-        -   [`get_SDA_interpretation`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_interpretation.html)
-        -   [`get_SDA_muaggatt`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_muaggatt.html)
-        -   [`get_SDA_pmgroupname`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_pmgroupname.html)
-        -   [`get_SDA_property`](http://ncss-tech.github.io/soilDB/docs/reference/get_SDA_property.html)
+        -   [`get_SDA_hydric`](http://ncss-tech.github.io/soilDB/reference/get_SDA_hydric.html)
+        -   [`get_SDA_interpretation`](http://ncss-tech.github.io/soilDB/reference/get_SDA_interpretation.html)
+        -   [`get_SDA_muaggatt`](http://ncss-tech.github.io/soilDB/reference/get_SDA_muaggatt.html)
+        -   [`get_SDA_pmgroupname`](http://ncss-tech.github.io/soilDB/reference/get_SDA_pmgroupname.html)
+        -   [`get_SDA_property`](http://ncss-tech.github.io/soilDB/reference/get_SDA_property.html)
+        -   [`get_SDA_coecosite`](http://ncss-tech.github.io/soilDB/reference/get_SDA_coecosite.html)
 -   SSURGO Local Geodatabases
-    -   [`fetchGDB`](http://ncss-tech.github.io/soilDB/docs/reference/fetchGDB.html)
+    -   [`fetchGDB`](http://ncss-tech.github.io/soilDB/reference/fetchGDB.html)
 -   ROSETTA
-    -   [`ROSETTA`](http://ncss-tech.github.io/soilDB/docs/reference/ROSETTA.html)
+    -   [`ROSETTA`](http://ncss-tech.github.io/soilDB/reference/ROSETTA.html)
 -   SSURGO/KSSL via SoilWeb
-    -   [`fetchKSSL`](http://ncss-tech.github.io/soilDB/docs/reference/fetchKSSL.html)
-    -   [`fetchOSD`](http://ncss-tech.github.io/soilDB/docs/reference/fetchOSD.html)
-    -   [`siblings`](http://ncss-tech.github.io/soilDB/docs/reference/siblings.html)
-    -   [`OSDquery`](http://ncss-tech.github.io/soilDB/docs/reference/OSDquery.html)
-    -   [`seriesExtent`](http://ncss-tech.github.io/soilDB/docs/reference/seriesExtent.html)
-    -   [`taxaExtent`](http://ncss-tech.github.io/soilDB/docs/reference/taxaExtent.html)
-    -   [`mukey.wcs`](http://ncss-tech.github.io/soilDB/docs/reference/mukey.wcs.html)
-    -   [`ISSR800.wcs`](http://ncss-tech.github.io/soilDB/docs/reference/ISSR800.wcs.html)
+    -   [`fetchKSSL`](http://ncss-tech.github.io/soilDB/reference/fetchKSSL.html)
+    -   [`fetchOSD`](http://ncss-tech.github.io/soilDB/reference/fetchOSD.html)
+    -   [`siblings`](http://ncss-tech.github.io/soilDB/reference/siblings.html)
+    -   [`OSDquery`](http://ncss-tech.github.io/soilDB/reference/OSDquery.html)
+    -   [`seriesExtent`](http://ncss-tech.github.io/soilDB/reference/seriesExtent.html)
+    -   [`taxaExtent`](http://ncss-tech.github.io/soilDB/reference/taxaExtent.html)
+    -   [`mukey.wcs`](http://ncss-tech.github.io/soilDB/reference/mukey.wcs.html)
+    -   [`ISSR800.wcs`](http://ncss-tech.github.io/soilDB/reference/ISSR800.wcs.html)
 -   NASIS WWW interface
-    -   [`parseWebReport`](http://ncss-tech.github.io/soilDB/docs/reference/parseWebReport.html)
-    -   [`fetchNASISWebReport`](http://ncss-tech.github.io/soilDB/docs/reference/fetchNASISWebReport.html)
+    -   [`parseWebReport`](http://ncss-tech.github.io/soilDB/reference/parseWebReport.html)
+    -   [`fetchNASISWebReport`](http://ncss-tech.github.io/soilDB/reference/fetchNASISWebReport.html)
 -   SCAN/SNOTEL
-    -   [`fetchSCAN`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSCAN.html)
-    -   [`SCAN_SNOTEL_metadata`](http://ncss-tech.github.io/soilDB/docs/reference/SCAN_SNOTEL_metadata.html)
+    -   [`fetchSCAN`](http://ncss-tech.github.io/soilDB/reference/fetchSCAN.html)
+    -   [`SCAN_SNOTEL_metadata`](http://ncss-tech.github.io/soilDB/reference/SCAN_SNOTEL_metadata.html)
 -   Henry Mount Soil and Water Database
-    -   [`fetchHenry`](http://ncss-tech.github.io/soilDB/docs/reference/fetchHenry.html)
+    -   [`fetchHenry`](http://ncss-tech.github.io/soilDB/reference/fetchHenry.html)
 -   NASIS local database
-    -   [`fetchNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/fetchNASIS.html)
+    -   [`fetchNASIS`](http://ncss-tech.github.io/soilDB/reference/fetchNASIS.html)
     -   <span style="color:red">**NEW:**</span> Argument `dsn` to
         specify path to connect to alternate (SQLite) data sources with
         NASIS schema
     -   <span
-        style="color:red">**NEW:**</span>[`dbConnectNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/dbConnectNASIS.html)
-        (alias `NASIS`) - create a *DBIConnection* to local NASIS
+        style="color:red">**NEW:**</span>[`dbConnectNASIS`](http://ncss-tech.github.io/soilDB/reference/dbConnectNASIS.html)
+        (alias `NASIS()`) - create a *DBIConnection* to local NASIS
         database
     -   <span
-        style="color:red">**NEW:**</span>[`dbQueryNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/dbQueryNASIS.html) -
+        style="color:red">**NEW:**</span>[`dbQueryNASIS`](http://ncss-tech.github.io/soilDB/reference/dbQueryNASIS.html) -
         query NASIS local database (and close connection with
         `close=TRUE`)
     -   <span
-        style="color:red">**NEW:**</span>[`createStaticNASIS`](http://ncss-tech.github.io/soilDB/docs/reference/createStaticNASIS.html) -
+        style="color:red">**NEW:**</span>[`createStaticNASIS`](http://ncss-tech.github.io/soilDB/reference/createStaticNASIS.html) -
         create list of NASIS tables or write to SQLite
 -   SoilGrids
-    -   [`fetchSoilGrids`](http://ncss-tech.github.io/soilDB/docs/reference/fetchSoilGrids.html)
+    -   [`fetchSoilGrids`](http://ncss-tech.github.io/soilDB/reference/fetchSoilGrids.html)
 
 ## Miscellaneous Functions
 
--   [`estimateSTR`](http://ncss-tech.github.io/soilDB/docs/reference/estimateSTR.html)
--   [`STRplot`](http://ncss-tech.github.io/soilDB/docs/reference/STRplot.html)
--   [`KSSL_VG_model`](http://ncss-tech.github.io/soilDB/docs/reference/KSSL_VG_model.html)
--   [`simplfyFragmentData`](http://ncss-tech.github.io/soilDB/docs/reference/simplfyFragmentData.html)
--   [`simplifyColorData`](http://ncss-tech.github.io/soilDB/docs/reference/simplifyColorData.html)
--   [`uncode`](http://ncss-tech.github.io/soilDB/docs/reference/uncode.html)
--   [`code`](http://ncss-tech.github.io/soilDB/docs/reference/code.html)
--   [`get_NOAA_GHCND`](http://ncss-tech.github.io/soilDB/docs/reference/get_NOAA_GHCND.html)
+-   [`estimateSTR`](http://ncss-tech.github.io/soilDB/reference/estimateSTR.html)
+-   [`STRplot`](http://ncss-tech.github.io/soilDB/reference/STRplot.html)
+-   [`KSSL_VG_model`](http://ncss-tech.github.io/soilDB/reference/KSSL_VG_model.html)
+-   [`simplfyFragmentData`](http://ncss-tech.github.io/soilDB/reference/simplfyFragmentData.html)
+-   [`simplifyColorData`](http://ncss-tech.github.io/soilDB/reference/simplifyColorData.html)
+-   [`uncode`](http://ncss-tech.github.io/soilDB/reference/uncode.html)
+-   [`code`](http://ncss-tech.github.io/soilDB/reference/code.html)
+-   [`get_NOAA_GHCND`](http://ncss-tech.github.io/soilDB/reference/get_NOAA_GHCND.html)
 
 ## Tutorials and Demonstrations