diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 1c140470..7fcaefe1 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -2,7 +2,7 @@ pandoc: 2.7.3
pkgdown: 2.0.2
pkgdown_sha: ~
articles: {}
-last_built: 2022-01-24T17:07Z
+last_built: 2022-01-29T01:01Z
urls:
reference: https://ncss-tech.github.io/soilDB/reference
article: https://ncss-tech.github.io/soilDB/articles
diff --git a/docs/reference/Rplot004.png b/docs/reference/Rplot004.png
index 489de55a..0cca6d6a 100644
Binary files a/docs/reference/Rplot004.png and b/docs/reference/Rplot004.png differ
diff --git a/docs/reference/Rplot005.png b/docs/reference/Rplot005.png
index f110542e..2327b861 100644
Binary files a/docs/reference/Rplot005.png and b/docs/reference/Rplot005.png differ
diff --git a/docs/reference/SoilWeb_spatial_query.html b/docs/reference/SoilWeb_spatial_query.html
index b04a666e..bbe507fc 100644
--- a/docs/reference/SoilWeb_spatial_query.html
+++ b/docs/reference/SoilWeb_spatial_query.html
@@ -109,7 +109,7 @@ Examples
SoilWeb_spatial_query(coords=c(-121, 38))
}
#> ogc_fid areasymbol musym mukey soilweb_last_update dist_meters
-#> 1 1493734 ca077 220 462112 2021-09-09 92.17456302
+#> 1 1493094 ca077 220 462112 2021-09-09 92.17456302
# }
diff --git a/docs/reference/fetchOSD.html b/docs/reference/fetchOSD.html
index a95bf8f8..9415aab3 100644
--- a/docs/reference/fetchOSD.html
+++ b/docs/reference/fetchOSD.html
@@ -88,7 +88,8 @@ Details
empirical probabilities for parent material kind, derived from the current SSURGO snapshot
pmorigin
empirical probabilities for parent material origin, derived from the current SSURGO snapshot
mlra
empirical MLRA membership values, derived from the current SSURGO snapshot
climate
-experimental climate summaries from PRISM stack (CONUS only)
metadata
+experimental climate summaries from PRISM stack (CONUS only)
NCCPI
+select quantiles of NCCPI and Irrigated NCCPI, derived from the current SSURGO snapshot
metadata
metadata associated with SoilWeb cached summaries
When using extended = TRUE, there are a couple of scenarios in which series morphology contained in SPC do not fully match records in the associated series summaries (e.g. competing).- 1. A query for soil series that exist entirely outside of CONUS (e.g. PALAU).
- Climate summaries are empty data.frames because these summaries are currently generated from PRISM. We are working on a solution that uses DAYMET.
- 2. A query for data within CONUS, but OSD morphology missing due to parsing error (e.g. formatting, typos).
- Extended summaries are present but morphology missing from SPC. A warning is issued.
These last two cases are problematic for analysis that makes use of morphology and extended data, such as outlined in this tutorial on competing soil series.
@@ -139,7 +140,7 @@ Examples
}
}
-#> List of 16
+#> List of 17
#> $ SPC :Formal class 'SoilProfileCollection' [package "aqp"] with 9 slots
#> $ competing :'data.frame': 84 obs. of 3 variables:
#> $ geog_assoc_soils:'data.frame': 77 obs. of 2 variables:
@@ -155,7 +156,8 @@ Examples
#> $ mlra :'data.frame': 52 obs. of 4 variables:
#> $ climate.annual :'data.frame': 88 obs. of 12 variables:
#> $ climate.monthly :'data.frame': 264 obs. of 14 variables:
-#> $ soilweb.metadata:'data.frame': 20 obs. of 2 variables:
+#> $ NCCPI :'data.frame': 11 obs. of 16 variables:
+#> $ soilweb.metadata:'data.frame': 21 obs. of 2 variables:
# }
diff --git a/docs/reference/fetchSDA_spatial.html b/docs/reference/fetchSDA_spatial.html
index efbdfe5b..03020c09 100644
--- a/docs/reference/fetchSDA_spatial.html
+++ b/docs/reference/fetchSDA_spatial.html
@@ -123,15 +123,15 @@ Examples
head(fetchSDA_spatial(x = "2x8l5", by="nmusym", add.fields="muname"))
}
#> Using 1 chunks...
-#> Chunk #1 completed (n = 1; 1 secs)
-#> Done in 1 secs; mean/chunk: 1 secs; mean/symbol: 1.01 secs.
+#> Chunk #1 completed (n = 1; 1.1 secs)
+#> Done in 1.1 secs; mean/chunk: 1.1 secs; mean/symbol: 1.07 secs.
#> Using 1 chunks...
-#> Chunk #1 completed (n = 3; 1.1 secs)
-#> Done in 1.4 secs; mean/chunk: 1.1 secs; mean/symbol: 0.46 secs.
+#> Chunk #1 completed (n = 3; 0.7 secs)
+#> Done in 0.9 secs; mean/chunk: 0.7 secs; mean/symbol: 0.3 secs.
#> Loading required package: sp
#> Using 1 chunks...
-#> Chunk #1 completed (n = 3; 0.8 secs)
-#> Done in 1 secs; mean/chunk: 0.8 secs; mean/symbol: 0.32 secs.
+#> Chunk #1 completed (n = 3; 0.5 secs)
+#> Done in 0.7 secs; mean/chunk: 0.5 secs; mean/symbol: 0.24 secs.
#> class : SpatialPolygonsDataFrame
#> features : 6
diff --git a/docs/reference/fetchSoilGrids.html b/docs/reference/fetchSoilGrids.html
index 9498d1a2..44f29724 100644
--- a/docs/reference/fetchSoilGrids.html
+++ b/docs/reference/fetchSoilGrids.html
@@ -114,8 +114,7 @@ Examples
if (!inherits(x, 'try-error'))
plotSPC(x, name = NA, color = "socQ50")
}
-#> Error in httr::content(response, as = "text", encoding = "UTF-8") :
-#> is.response(x) is not TRUE
+
# }
diff --git a/docs/reference/fetchVegdata.html b/docs/reference/fetchVegdata.html
index e249decd..9088cb36 100644
--- a/docs/reference/fetchVegdata.html
+++ b/docs/reference/fetchVegdata.html
@@ -44,7 +44,7 @@
@@ -57,6 +57,61 @@
Get vegetation plot data from local NASIS database
SS
= TRUE,
stringsAsFactors
= default.stringsAsFactors(),
dsn
= NULL
+
)
+
+
get_vegplot_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_location_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_trhi_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_species_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_transect_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_transpecies_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_tree_si_summary_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_tree_si_details_from_NASIS_db(
+ SS
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
+
)
+
+
get_vegplot_textnote_from_NASIS_db(
+ SS
= TRUE,
+ fixLineEndings
= TRUE,
+ stringsAsFactors
= default.stringsAsFactors(),
+ dsn
= NULL
)Arguments
dsn
Optional: path to local SQLite database containing NASIS
table structure; default: NULL
+fixLineEndings
+Replace '\r\n' with '\n'; Default: TRUE
Value
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 0cbdc304..9cf24f8b 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -123,7 +123,7 @@