diff --git a/docs/index.html b/docs/index.html index df23995c..95752848 100644 --- a/docs/index.html +++ b/docs/index.html @@ -89,7 +89,7 @@

Citation

-

Dylan Beaudette, Jay Skovlin, Stephen Roecker and Andrew Brown (2021). soilDB: Soil Database Interface. R package version 2.6.1. https://CRAN.R-project.org/package=soilDB

+

Dylan Beaudette, Jay Skovlin, Stephen Roecker and Andrew Brown (2021). soilDB: Soil Database Interface. R package version 2.6.2. https://CRAN.R-project.org/package=soilDB

@@ -136,13 +136,12 @@

  • AKSite, Montana RangeDB, and PedonPC 6.x get and fetch methods now use {DBI}+{odbc}

    • -
    +

    -Other APIs

    +SoilWeb API

    @@ -166,9 +165,7 @@

  • ROSETTA
  • SSURGO/KSSL via SoilWeb @@ -178,15 +175,9 @@

  • siblings
  • OSDquery
  • seriesExtent
    • -
  • -NEW: taxaExtent -
    • -
  • -NEW: mukey.wcs -
    • -
  • -NEW: ISSR800.wcs -
    • +
  • taxaExtent
    • +
  • mukey.wcs
    • +
  • ISSR800.wcs

  • NASIS WWW interface @@ -281,7 +272,7 @@ 

    # viz of hillslope position, from SSURGO component records
 res <- vizHillslopePosition(s$hillpos, annotation.cex = 0.9)
 print(res$fig)
    -

    +

    @@ -295,7 +286,7 @@

    axis.line.offset = -0.1, width = 0.2 )

    -

    +

    @@ -326,7 +317,7 @@

    cex.taxon.labels = 1, cex.names = 1 )

    -

    +

    diff --git a/docs/news/index.html b/docs/news/index.html index 3c3bbfb9..919365ba 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -114,9 +114,9 @@

    Changelog

    Source: NEWS.md
    -
    +

    -soilDB 2.6.2 (2021-05-07) Unreleased +soilDB 2.6.2 (2021-05-14) Unreleased

    • Added formativeElement argument to taxaExtent() (SoilWeb taxon extent function) @@ -129,6 +129,8 @@

      fetchNASIS(from="pedons") result now contains the "taxclname" (full family-level taxon name) field from the NASIS pedon table; this value is calculated based on contents of petaxhistory child table

    • get_SDA_interpretation and get_SDA_property now support aggregation method="NONE" allowing for returning properties, classes and ratings for individual components or horizons (https://github.com/ncss-tech/soilDB/pull/181)
      • +
    • +ISSR800.wcs and mukey.wcs now return a result that inherits from try-error (and a message) if the Web Coverage Service query fails
    diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 07375cd9..27d53d95 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,5 +2,5 @@ pandoc: 2.7.3 pkgdown: 1.6.1 pkgdown_sha: ~ articles: {} -last_built: 2021-05-08T00:41Z +last_built: 2021-05-15T01:25Z diff --git a/docs/reference/ISSR800.wcs.html b/docs/reference/ISSR800.wcs.html index ae2dde85..b26387e0 100644 --- a/docs/reference/ISSR800.wcs.html +++ b/docs/reference/ISSR800.wcs.html @@ -154,7 +154,7 @@

    Arg

    Value

    -

    raster object containing indexed map unit keys and associated raster attribute table

    +

    raster object containing indexed map unit keys and associated raster attribute table or a try-error if request fails

    Note

    There are still some issues to be resolved related to the encoding of NA Variables with a natural zero (e.g. SAR) have 0 set to NA.

    diff --git a/docs/reference/SoilWeb_spatial_query.html b/docs/reference/SoilWeb_spatial_query.html index 0a22ec97..e76112b2 100644 --- a/docs/reference/SoilWeb_spatial_query.html +++ b/docs/reference/SoilWeb_spatial_query.html @@ -182,7 +182,7 @@

    Examp SoilWeb_spatial_query(coords=c(-121, 38)) }

    #> ogc_fid areasymbol musym mukey soilweb_last_update dist_meters -#> 1 1484974 ca077 220 462112 2020-05-29 92.17456302
    # } +#> 1 1485651 ca077 220 462112 2020-05-29 92.17456302
    # }
    diff --git a/docs/reference/fetchNASISWebReport-3.png b/docs/reference/fetchNASISWebReport-3.png index ed2cb99f..39738aef 100644 Binary files a/docs/reference/fetchNASISWebReport-3.png and b/docs/reference/fetchNASISWebReport-3.png differ diff --git a/docs/reference/fetchNASISWebReport.html b/docs/reference/fetchNASISWebReport.html index 8c55d638..1604e40a 100644 --- a/docs/reference/fetchNASISWebReport.html +++ b/docs/reference/fetchNASISWebReport.html @@ -322,7 +322,7 @@

    Examp
    #> Loading required package: ggplot2
    #> Loading required package: gridExtra
    #> #> Attaching package: 'gridExtra'
    #> The following object is masked from 'package:aqp': #> -#> combine
    #> Loading required namespace: rvest
    #> getting project 'EVAL - MLRA 111A - Ross silt loam, 0 to 2 percent slopes, frequently flooded' from NasisReportsWebSite
    #> converting profile IDs from integer to character
    #> converting horizon IDs in column `chiid` to character
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Use of `x$depb_r` is discouraged. Use `depb_r` instead.
    #> Warning: Removed 119 rows containing missing values (geom_rect).
    #> Warning: Removed 119 row(s) containing missing values (geom_path).
    #> Warning: Removed 119 rows containing missing values (geom_point).
    #> Warning: no non-missing arguments to max; returning -Inf
    #> Warning: no non-missing arguments to max; returning -Inf
    #> Warning: no non-missing arguments to max; returning -Inf
    #> Warning: no non-missing arguments to max; returning -Inf
    #> Warning: no non-missing arguments to max; returning -Inf
    #> Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
    #> Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
    #> Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
    #> Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
    #> Warning: Position guide is perpendicular to the intended axis. Did you mean to specify a different guide `position`?
    +#> combine
    #> Loading required namespace: rvest
    #> getting project 'EVAL - MLRA 111A - Ross silt loam, 0 to 2 percent slopes, frequently flooded' from NasisReportsWebSite
    #> converting profile IDs from integer to character
    #> converting horizon IDs in column `chiid` to character
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Removed 49 row(s) containing missing values (geom_path).
    #> Warning: Use of `x$depb_r` is discouraged. Use `depb_r` instead.
    # } diff --git a/docs/reference/fetchSDA_spatial.html b/docs/reference/fetchSDA_spatial.html index 4795eeba..f07252b6 100644 --- a/docs/reference/fetchSDA_spatial.html +++ b/docs/reference/fetchSDA_spatial.html @@ -204,7 +204,7 @@

    Examp # demo adding a field (`muname`) to attribute table of result head(fetchSDA_spatial(x = "2x8l5", by="nmusym", add.fields="muname")) } -

    #> Using 1 chunks...
    #> Chunk #1 completed (n = 1; 0.5 secs)
    #> Done in 0.5 secs; mean/chunk: 0.5 secs; mean/symbol: 0.53 secs.
    #> Using 1 chunks...
    #> Chunk #1 completed (n = 3; 1.8 secs)
    #> Done in 2.1 secs; mean/chunk: 1.8 secs; mean/symbol: 0.7 secs.
    #> Loading required package: sp
    #> Using 1 chunks...
    #> Chunk #1 completed (n = 3; 1.7 secs)
    #> Done in 1.9 secs; mean/chunk: 1.7 secs; mean/symbol: 0.63 secs.
    #> class : SpatialPolygonsDataFrame +
    #> Using 1 chunks...
    #> Chunk #1 completed (n = 1; 0.4 secs)
    #> Done in 0.4 secs; mean/chunk: 0.4 secs; mean/symbol: 0.44 secs.
    #> Using 1 chunks...
    #> Chunk #1 completed (n = 3; 1.6 secs)
    #> Done in 1.8 secs; mean/chunk: 1.6 secs; mean/symbol: 0.59 secs.
    #> Loading required package: sp
    #> Using 1 chunks...
    #> Chunk #1 completed (n = 3; 1.6 secs)
    #> Done in 1.7 secs; mean/chunk: 1.6 secs; mean/symbol: 0.58 secs.
    #> class : SpatialPolygonsDataFrame #> features : 6 #> extent : -121.034, -120.9596, 38.01706, 38.24938 (xmin, xmax, ymin, ymax) #> crs : +proj=longlat +datum=WGS84 +no_defs diff --git a/docs/reference/mapunit_geom_by_ll_bbox.html b/docs/reference/mapunit_geom_by_ll_bbox.html index 3ed89a21..1d98dcb2 100644 --- a/docs/reference/mapunit_geom_by_ll_bbox.html +++ b/docs/reference/mapunit_geom_by_ll_bbox.html @@ -196,16 +196,8 @@

    Examp #> Linking to sp version:1.4-5 #> To mute warnings of possible GDAL/OSR exportToProj4() degradation, #> use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal. -#> Overwritten PROJ_LIB was D:/a/_temp/Library/rgdal/proj

    #> OGR data source with driver: GML -#> Source: "C:\Users\runneradmin\AppData\Local\Temp\RtmpoD5APT\file3982df17f6a.gml", layer: "mapunitpoly" -#> with 197 features -#> It has 8 fields
    #> single result set, returning a data.frame
    #> mukey muname -#> 1 462183 Aiken loam, 2 to 9 percent slopes, C Lower Montane -#> 2 462188 Aiken cobbly loam, 3 to 30 percent slopes -#> 3 462193 Argonaut loam, seeped variant -#> 4 462215 Chaix very rocky coarse sandy loam, 50 to 70 percent slopes -#> 5 462219 Cohasset loam, summits, 2 to 20 percent slopes, dry -#> 6 462220 Cohasset loam, shoulders, 3 to 20 percent slopes, dry
    # } +#> Overwritten PROJ_LIB was D:/a/_temp/Library/rgdal/proj
    #> Warning: cannot open URL 'https://sdmdataaccess.nrcs.usda.gov/Spatial/SDMNAD83Geographic.wfs?Service=WFS&Version=1.0.0&Request=GetFeature&Typename=MapunitPoly&BBOX=-120.54,38.61,-120.41,38.7': HTTP status was '500 Internal Server Error'
    #> Error in download.file(url = u, destfile = tf.full, quiet = FALSE) : +#> cannot open URL 'https://sdmdataaccess.nrcs.usda.gov/Spatial/SDMNAD83Geographic.wfs?Service=WFS&Version=1.0.0&Request=GetFeature&Typename=MapunitPoly&BBOX=-120.54,38.61,-120.41,38.7'
    #> could not download XML result from SDA
    # }