Backport #3061

neuronsimulator · Jan 24, 2025 · 8fb7527 · 8fb7527
1 parent 6dbd4da
commit 8fb7527
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Showing 3 changed files with 12 additions and 4 deletions.
diff --git a/docs/docs_requirements.txt b/docs/docs_requirements.txt
@@ -4,8 +4,7 @@ jupyter
 nbconvert
 recommonmark
 matplotlib
-# bokeh 3 seems to break docs notebooks
-bokeh<3
+bokeh
 # do not check import of next line
 ipython
 plotnine

diff --git a/nrn_requirements.txt b/nrn_requirements.txt
@@ -2,8 +2,7 @@ wheel
 setuptools<=70.3.0
 scikit-build
 matplotlib
-# bokeh 3 seems to break docs notebooks
-bokeh<3
+bokeh
 ipython
 cython
 packaging

diff --git a/share/lib/python/neuron/__init__.py b/share/lib/python/neuron/__init__.py
@@ -1751,3 +1751,13 @@ def _mview_html_tree(hlist, inside_mechanisms_in_use=0):
 if _get_ipython() is not None:
     html_formatter = _get_ipython().display_formatter.formatters["text/html"]
     html_formatter.for_type(hoc.HocObject, _hocobj_html)
+
+# in case Bokeh is installed, register a serialization function for hoc.Vector
+try:
+    from bokeh.core.serialization import Serializer
+
+    Serializer.register(
+        h.Vector, lambda obj, serializer: [serializer.encode(item) for item in obj]
+    )
+except ImportError:
+    pass