From 9e96849f641c7c25cd2ed4ebd882a9e14c11cc99 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 11:57:14 -0600 Subject: [PATCH 1/8] Update manual.md --- docs/tutorial/manual.md | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/docs/tutorial/manual.md b/docs/tutorial/manual.md index ada8362..2b22877 100644 --- a/docs/tutorial/manual.md +++ b/docs/tutorial/manual.md @@ -13,10 +13,8 @@ This is a condensed adaptation of a course taught at OHBM 2023. See the [course materials](https://neurostuff.github.io/meta-analysis-book/ohbm_course_intro.html) for a complete overview. ::: -In this tutorial, we demonstrate how to create a custom, manual meta-analysis. - *Neurosynth Compose* provides a streamlined workflow to facilitate study selection and -data extraction. You can then easily specify a meta-analysis and execute it in the cloud, +data extraction. You can then easily specify a high-quality manual meta-analysis and execute it in the cloud, rapidly generating results that you can inspect and share. :::tip @@ -316,4 +314,4 @@ Congratulations! You now have a Meta-Analysis specification that is ready to run You can execute your Meta-Analysis for free in the cloud on Google Colab by copying the unique *meta-analysis id* and pasting it into our Google Colab notebook. -![Meta-analysis run](/tutorial/ma_run.png) \ No newline at end of file +![Meta-analysis run](/tutorial/ma_run.png) From 7c4a2e35127a354e18dc879c50ed7b2556847461 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 11:58:44 -0600 Subject: [PATCH 2/8] Create _category.json --- docs/tutorial/_category.json | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 docs/tutorial/_category.json diff --git a/docs/tutorial/_category.json b/docs/tutorial/_category.json new file mode 100644 index 0000000..c57773e --- /dev/null +++ b/docs/tutorial/_category.json @@ -0,0 +1,4 @@ +{ + "label": "Tutorials", + "position": 2 +} From 422efeb73fb9c80734809a6ca1223232401b4daa Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:12:32 -0600 Subject: [PATCH 3/8] Create Name parent directory .. 2023-11-28-tutorials.md --- ...arent directory .. 2023-11-28-tutorials.md | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 blog/Name parent directory .. 2023-11-28-tutorials.md diff --git a/blog/Name parent directory .. 2023-11-28-tutorials.md b/blog/Name parent directory .. 2023-11-28-tutorials.md new file mode 100644 index 0000000..dc0ac6e --- /dev/null +++ b/blog/Name parent directory .. 2023-11-28-tutorials.md @@ -0,0 +1,26 @@ +--- +slug: tutorials-updates +title: New tutorials and updates +authors: alejandro +tags: [hello, neurosynth] +--- +Dear Neurosynth Community, + +I'm excited to announce important updates to *Neurosynth Compose*: A free and open platform for neuroimaging meta-analysis. + +First, we have added some easy to follow [tutorials](../tutorial) to our documentation, making it easy to become familiar with our platform. + +The tutorials cover two main uses cases we support: Manual and Automated Meta-analyses. Our platform make gold-standard *manual* meta-analyses much easier, by leveraging pre-extracted imaging data +and streamline user interfaces. Automated meta-analyses are ideal for generating exploratory results rapidly, enabling meta-analysis as part of routine scientific practice. + +We've also made many small but important updates to our platform, including significant performance updates and improvements to the user interface. +*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](../tutorial/manual). + +We also have some exciting new features in the pipeline that we'll release in early 2024 including: +* Image-based Meta-Analysis (IBMA). Soon, you will be able to use NeuroVault data as inputs for IBMA-- a more powerful and sensitive alternative to Coordinate Based Meta-Analysis. +* Advanced data extraction using Large Language Models (GPT). Early protypes to extract detailed information (such as participant demographics) from neuroimaging articles using LLMs +have shown promise. We are working on incorporating these workflows into *Neurosynth Compose*, making it even easier to identify relevant studies for meta-analysis. + +We look forward to your feedback! + +-Alejandro From c320e38db4e916aa6ba4da0f876f18aeab9beb0c Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:12:43 -0600 Subject: [PATCH 4/8] Rename Name parent directory .. 2023-11-28-tutorials.md to 2023-11-28-tutorials.md --- ...rectory .. 2023-11-28-tutorials.md => 2023-11-28-tutorials.md} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename blog/{Name parent directory .. 2023-11-28-tutorials.md => 2023-11-28-tutorials.md} (100%) diff --git a/blog/Name parent directory .. 2023-11-28-tutorials.md b/blog/2023-11-28-tutorials.md similarity index 100% rename from blog/Name parent directory .. 2023-11-28-tutorials.md rename to blog/2023-11-28-tutorials.md From f2b916bcfa774f283775348fb88c682f5c1f1791 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:16:29 -0600 Subject: [PATCH 5/8] Update 2023-11-28-tutorials.md --- blog/2023-11-28-tutorials.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/blog/2023-11-28-tutorials.md b/blog/2023-11-28-tutorials.md index dc0ac6e..0ddaacb 100644 --- a/blog/2023-11-28-tutorials.md +++ b/blog/2023-11-28-tutorials.md @@ -8,13 +8,13 @@ Dear Neurosynth Community, I'm excited to announce important updates to *Neurosynth Compose*: A free and open platform for neuroimaging meta-analysis. -First, we have added some easy to follow [tutorials](../tutorial) to our documentation, making it easy to become familiar with our platform. +First, we have added some easy to follow [tutorials](/docs/tutorial) to our documentation, making it easy to become familiar with our platform. The tutorials cover two main uses cases we support: Manual and Automated Meta-analyses. Our platform make gold-standard *manual* meta-analyses much easier, by leveraging pre-extracted imaging data and streamline user interfaces. Automated meta-analyses are ideal for generating exploratory results rapidly, enabling meta-analysis as part of routine scientific practice. We've also made many small but important updates to our platform, including significant performance updates and improvements to the user interface. -*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](../tutorial/manual). +*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual). We also have some exciting new features in the pipeline that we'll release in early 2024 including: * Image-based Meta-Analysis (IBMA). Soon, you will be able to use NeuroVault data as inputs for IBMA-- a more powerful and sensitive alternative to Coordinate Based Meta-Analysis. From ed30a041ef44483247574ba289004b4ac30db6d5 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:21:21 -0600 Subject: [PATCH 6/8] Update 2023-11-28-tutorials.md --- blog/2023-11-28-tutorials.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/blog/2023-11-28-tutorials.md b/blog/2023-11-28-tutorials.md index 0ddaacb..d3d98a9 100644 --- a/blog/2023-11-28-tutorials.md +++ b/blog/2023-11-28-tutorials.md @@ -8,13 +8,13 @@ Dear Neurosynth Community, I'm excited to announce important updates to *Neurosynth Compose*: A free and open platform for neuroimaging meta-analysis. -First, we have added some easy to follow [tutorials](/docs/tutorial) to our documentation, making it easy to become familiar with our platform. +First, we have added some easy to follow [tutorials](/docs/tutorial/index.mdx) to our documentation, making it easy to become familiar with our platform. The tutorials cover two main uses cases we support: Manual and Automated Meta-analyses. Our platform make gold-standard *manual* meta-analyses much easier, by leveraging pre-extracted imaging data and streamline user interfaces. Automated meta-analyses are ideal for generating exploratory results rapidly, enabling meta-analysis as part of routine scientific practice. We've also made many small but important updates to our platform, including significant performance updates and improvements to the user interface. -*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual). +*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual.md). We also have some exciting new features in the pipeline that we'll release in early 2024 including: * Image-based Meta-Analysis (IBMA). Soon, you will be able to use NeuroVault data as inputs for IBMA-- a more powerful and sensitive alternative to Coordinate Based Meta-Analysis. From 963b2e4bbd552c8320d3682170711d62deb387d1 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:23:12 -0600 Subject: [PATCH 7/8] Update 2023-11-28-tutorials.md --- blog/2023-11-28-tutorials.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/blog/2023-11-28-tutorials.md b/blog/2023-11-28-tutorials.md index d3d98a9..9d5d439 100644 --- a/blog/2023-11-28-tutorials.md +++ b/blog/2023-11-28-tutorials.md @@ -8,13 +8,13 @@ Dear Neurosynth Community, I'm excited to announce important updates to *Neurosynth Compose*: A free and open platform for neuroimaging meta-analysis. -First, we have added some easy to follow [tutorials](/docs/tutorial/index.mdx) to our documentation, making it easy to become familiar with our platform. +First, we have added some easy to follow [tutorials](/docs/tutorial/index) to our documentation, making it easy to become familiar with our platform. The tutorials cover two main uses cases we support: Manual and Automated Meta-analyses. Our platform make gold-standard *manual* meta-analyses much easier, by leveraging pre-extracted imaging data and streamline user interfaces. Automated meta-analyses are ideal for generating exploratory results rapidly, enabling meta-analysis as part of routine scientific practice. We've also made many small but important updates to our platform, including significant performance updates and improvements to the user interface. -*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual.md). +*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual). We also have some exciting new features in the pipeline that we'll release in early 2024 including: * Image-based Meta-Analysis (IBMA). Soon, you will be able to use NeuroVault data as inputs for IBMA-- a more powerful and sensitive alternative to Coordinate Based Meta-Analysis. From c58fb66c3945bf08ad364f08161dcc819ef3c927 Mon Sep 17 00:00:00 2001 From: Alejandro de la Vega Date: Tue, 28 Nov 2023 16:29:24 -0600 Subject: [PATCH 8/8] Update 2023-11-28-tutorials.md --- blog/2023-11-28-tutorials.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/blog/2023-11-28-tutorials.md b/blog/2023-11-28-tutorials.md index 9d5d439..e990ec3 100644 --- a/blog/2023-11-28-tutorials.md +++ b/blog/2023-11-28-tutorials.md @@ -8,13 +8,13 @@ Dear Neurosynth Community, I'm excited to announce important updates to *Neurosynth Compose*: A free and open platform for neuroimaging meta-analysis. -First, we have added some easy to follow [tutorials](/docs/tutorial/index) to our documentation, making it easy to become familiar with our platform. +First, we have added some easy to follow [tutorials](https://neurostuff.github.io/compose-docs/tutorial) to our documentation, making it easy to become familiar with our platform. The tutorials cover two main uses cases we support: Manual and Automated Meta-analyses. Our platform make gold-standard *manual* meta-analyses much easier, by leveraging pre-extracted imaging data and streamline user interfaces. Automated meta-analyses are ideal for generating exploratory results rapidly, enabling meta-analysis as part of routine scientific practice. We've also made many small but important updates to our platform, including significant performance updates and improvements to the user interface. -*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](/docs/tutorial/manual). +*Neurosynth Compose* is now more intuitive and easier to use. Give it a try by following our [manual meta-analysis tutorial](https://neurostuff.github.io/compose-docs/tutorial/manual). We also have some exciting new features in the pipeline that we'll release in early 2024 including: * Image-based Meta-Analysis (IBMA). Soon, you will be able to use NeuroVault data as inputs for IBMA-- a more powerful and sensitive alternative to Coordinate Based Meta-Analysis.