diff --git a/docs/guide/pages/Project/Curation.md b/docs/guide/pages/Project/Curation.md deleted file mode 100644 index 038d18e..0000000 --- a/docs/guide/pages/Project/Curation.md +++ /dev/null @@ -1,198 +0,0 @@ ---- -title: Curation -sidebar_position: 0 ---- - -# Curation -## Introduction - -The curation phase is the first step when creating a meta-analysis. In the most basic case, it involves -searching for and importing studies into the project and then selecting out any -studies that may possibly be relevant to the meta-analysis by systematically categorizing each one. -This involves **excluding** the study if is not relevant, or choosing to **include** it within the meta-analysis. - -## Getting Started With Curation - -The curation interface uses columns as a way to label studies based on their current status. -The left most column is the starting point and all studies imported into the project will begin there. -The right most column is the **inclusion column** and is the place where studies will go to be included in the meta-analysis. - -The overall goal is to get studies from the left most starting column, and narrow them down to a final subset of included studies in the right most column. -If a study is not eligible for inclusion at any point of the process, it should be set as "excluded" before it reaches the inclusion column. -(Studies within the inclusion column cannot be excluded.) - -The curation step is complete when all studies have been categorized, either by being included or excluded. - -When you first start the curation phase, a button appears prompting you to get started. Clicking this button will -yield a few workflow options in a dropdown. Depending on the workflow option you choose, different curation columns -will be created to best suite your approach. This sets the tone for how you would like to approach the curation phase, -as well as the meta-analysis in general. - -The options are explained in more detail below: - -### PRISMA Workflow - -PRISMA stands for the **Preferred Reporting Items for Systematic Review and Meta-Analyses**. The -[PRISMA guidelines](http://www.prisma-statement.org/?AspxAutoDetectCookieSupport=1) are a set of rules for reporting a -systematic review, and are the gold standard for producing a proper, rigorous, and transparent meta-analysis. - -If you are trying to create a rigorous [manual meta-analysis](/compose-docs/tutorial/manual), or if you are trying to create a -[PRISMA compliant semi-automated meta-analysis](/compose-docs/tutorial/semi-automated), you will want to select this option. - -When you select this option, neurosynth-compose will automatically initialize the curation step with 4 distinct columns as -dictated by PRISMA guidelines: **Identification, Screening, Eligibility, Included**. - -After importing studies into neurosynth, they will be placed into the identification column and studies are triaged from there. - -:::info PRISMA Summary -The **Identification** column is where all imported studies are deposited into initially. As alluded to by the name, the identification -column is where you identify all records yielded from your search. In this column, you wil exclude studies purely based on whether they are -duplicates of existing studies. All other studies are promoted. - -The **Screening** column consists of all records that have been screened for duplicates. In this column, you want to review the titles/abstracts of studies -and exclude purely based on whether they are irrelevant to your research question or domain. All other studies are promoted. - -The **Eligibility** column consists of all records that have been screened for duplicates and irrelevant content. In this column, you want to -review the full text of studies and exclude based on whether the study described aligns with the standards of the meta-analysis itself. Reasons -for exclusion may include wrong setting, wrong patient population, wrong intervention, wrong paragdigm, etc. - -The **Included** column consists of all records that have passed previous levels of exclusion and can be considered for the next step of the project. - -For more information, consult the [PRISMA guidelines](http://www.prisma-statement.org/?AspxAutoDetectCookieSupport=1). -::: - -### Simple Workflow - -If you are trying to create a less rigorous [semi-automated meta-analysis](/compose-docs/tutorial/semi-automated), -or if you want to create an [automated meta-analysis](/compose-docs/tutorial/large-scale) but filter the studies that go into it, -you will want to select this option. - -Selecting this option will initialize the curation phase with two columns. Similar to the PRISMA compliant workflow, the left most column -is where studies will be placed when they are imported into the project. However, this workflow is much more straightforward. If a study needs to be -excluded for any reason, it is excluded in this column. All other studies should then be promoted to the right most inclusion column which will include them -within the meta-analysis. - -### Custom Workflow - -If there is another workflow that is needed but not supported by the above two options, you can select this option to manually set the number of -curation columns as well as the curation column names. - -The left most column will still be where imported studies are placed into, and the right most column will remain the inclusion column. - -## Importing - -After selecting a workflow, you need to import studies into the curation phase. There are multiple ways to do this to allow for maximum -flexibility. - -To begin, click the **IMPORT STUDIES** button on the top right. This will bring you to a wizard which will walk you through the steps required -to import studies into neurosynth-compose. After selecting the studies for import, you will be asked to give your import a name and address -any potential duplicates that may arise. - -:::tip -When it comes to naming your import, we recommend giving a name that is useful or semantically meaningful. This will be useful when you come back -and want to know where a certain study was imported from and helps with provenance. -::: - -The import options are explained in more details below: - -### Import from Neurostore - -Importing from neurostore utilizes the Study search UI similar to the [Study Page](https://compose.neurosynth.org/studies). -After entering your search, click the bottom right button to import the searched studies into your project. - -:::tip -We recommend importing from neurostore whenever possible. Studies imported from neurostore are highly likely to have coordinates that are -already present. This will save a lot of time and effort during the extraction phase. -::: - -### Import from PubMed - -Use this option to import studies directly from PubMed. To start, you need to go to the [PubMed Site](https://pubmed.ncbi.nlm.nih.gov/) -and either enter in a search or navigate to a previously created collection. - -To import the search or collection from PubMed into neurosynth-compose, you will need a text file containing a list of PMIDs. -You can obtain this by going to your collection/search and clicking the **Save** button. Set **Selection** to **All results** -and set **Format** to **PMID**. Click **Create file** and your text file containing the PMIDs will be generated and downloaded. - -:::caution -Neurosynth-Compose uses the PubMed API to import studies. As a result, the maximum number of PMIDs that can be imported at once is 1,500. -If your collection or search has more than 1,500 PMIDs, consider splitting the import into multiple different text files. -::: - -### Import from BibTex/RIS/endnote - -Use this option to import studies via a .bib, .RIS, or .enw file. This may be useful if you want to import from a citation manager like Zotero. - -### Create Custom Study - -If there is any record that cannot be easily imported using one of the methods listed above, you can also manually create a study. This may be necessary -to include resources like unpublished studies. - -### Handling Duplicates - -When neurosynth-compose detects duplicates, it will ask the user to choose how they want to reconcile. In most cases -the user will want to mark one study as a duplicate and keep the other one. However, the user always has the flexibility to keep both. - -If the "KEEP THIS STUDY" button is selected, the interface will immediately set the other options as "THIS IS A DUPLICATE". This feature is -a convenience and is the most common use case, but can be overridden simply by selecting a different option for the given study. - -:::info -Neurosynth-compose does not delete studies. When a duplicate is discovered, neurosynth-compose has the user decide how they want to -proceed. If a study is marked as a duplicate, it is set as **excluded** but it is not discarded. This is to ensure that provenance during the -curation process is maintained. -::: - -There are two potential ways that duplicates can occur. - -#### Duplicates are detected between the studies being imported and the studies already in the project - -This will happen if you are importing a study and we have detected that either the title, PMID, or DOI is the same as -one already in the project. If this happens, step (5) of the import page will ask you to reconcile these duplicates. - -If a study has already been promoted, marking it as a duplicate will effectively "demote" it, bringing it back to the first column. -This occurs even for non-PRISMA workflows. - -#### Duplicates are detected within the file you are importing - -Although rare, it is possible to have duplicates within a given import. This can happen if the RIS file you are importing has duplicate entries for example. -If this occurs, neurosynth-compose will prompt the user to select which study they want to keep, and which ones they want to discard just like -in the above case. - -Studies marked as duplicate in the import are not deleted. - -## Excluding and Promoting Studies - -Once studies have been imported into the first column of the curation phase, they need to be triaged. Depending on what kind of rigor you want to -employ for your meta-analysis, this process of excluding and promoting studies may be quite involved. - -To begin, either click on the button at the top of the column or click on any study in the column. This will open up a dialog page which will show the study -along with a bunch of options: **PROMOTE, NEEDS REVIEW**, and **EXCLUDE**. There is also a button to **ADD TAGS** which will assign an informational tag to the -study. - -All studies must be either excluded or moved to the inclusion column in order to progress to the extraction phase. - -### Exclude - -To exclude a study, click the **EXCLUDE** button and select the exclusion reason. You can either choose from the preset exclusion reasons or you can begin -typing to create a new one. - -For the PRISMA workflow, the button looks a bit different. Depending on the column you are on (identification vs screening vs eligibility) a default exclusion -reason will be down on the button. While we do not recommend it, you can click the arrow button and start typing in the input to create a new exclusion reason. -Revisit the [PRISMA workflow section](/compose-docs/guide/pages/Project/Curation#prisma-workflow) for a reminder of what exclusion criteria to use for each -column. - -### Promote - -If you have determined that you have no issues with the study for the current curation column, you can click the **PROMOTE** button which will move the -study forward to the next curation column on the right. If it is moved into the right most inclusion column, then it will be included in the meta-analysis. - -For the first column (and especially in the case of a PRISMA workflow) it can be quite tedious to promote all the studies to the next curation column. If you think that all duplicates have been resolved, you can exit the dialog and click the **PROMOTE ALL UNCATEGORIZED STUDIES** button. This will promote all studies in the first -curation column that have not been excluded. - -## Move to Extraction - -When you have successfully categorized all the imported studies by either excluding them or moving them to the inclusion column, then you have -successfully completed the curation portion of the meta-analysis. -Neurosynth-Compose can detect this and will reveal a new button: **MOVE TO EXTRACTION PHASE**. - -Clicking this button will move you back to the project page and get you started on the next major component to building your meta-analysis: extraction. \ No newline at end of file diff --git a/docs/guide/pages/Project/index.mdx b/docs/guide/pages/Project/index.mdx deleted file mode 100644 index 3320952..0000000 --- a/docs/guide/pages/Project/index.mdx +++ /dev/null @@ -1,25 +0,0 @@ ---- -title: Project -sidebar_position: 0 ---- - -# Project - -### Overview - -A project consists of the various components necessary to run a meta-analysis from start to finish. -Within a project you will be able to: - 1. **Curate** studies of interest and select the ones to be included in the meta-analysis - 2. **Extract** the relevant data such as coordinates and other relevant meta-data - 3. **Specify** the algorithm and corrector you would like to use to run the meta-analysis - 4. **Run** the meta-analysis and **View** the results - -You can open a specific project by logging in, navigating to the -[My Projects](https://compose.neurosynth.org/projects) page, and selecting a project you've created. -To create a new project, click the New Project button in the top navbar and input the name/description. - -When you view a project for the first time, you'll notice that you'll default to the "Edit Project" tab. -The "View Meta-Analyses" tab will be disabled and will become enabled when you have created the first meta-analysis specification -for the project. - -In order to successfully run a meta-analysis, you must sequentially complete the various Project steps as shown on the page. \ No newline at end of file diff --git a/docs/guide/pages/_category_.json b/docs/guide/pages/_category_.json deleted file mode 100644 index 50f809a..0000000 --- a/docs/guide/pages/_category_.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "label": "Site Pages", - "position": 0 -} diff --git a/docs/guide/pages/index.mdx b/docs/guide/pages/index.mdx deleted file mode 100644 index d86b2f8..0000000 --- a/docs/guide/pages/index.mdx +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: Site Pages -sidebar_position: 0 ---- - -import DocCardList from '@theme/DocCardList'; - -# Site Pages - -### Overview -This is an overview of all the pages on the neurosynth-compose platform. - - \ No newline at end of file diff --git a/docs/guide/walkthrough/Project/Curation.md b/docs/guide/walkthrough/Project/Curation.md new file mode 100644 index 0000000..bd94e32 --- /dev/null +++ b/docs/guide/walkthrough/Project/Curation.md @@ -0,0 +1,166 @@ +--- +title: Curation +sidebar_position: 0 +--- + +# Curation + +*Curation* is the first step in creating a meta-analysis, and begins by *searching* for and *importing* studies into the project. Next, you will *review* studies for inclusion based on their relevancy to your research question. This involves **excluding** irrelevant studies, and **including** relevant ones. + +At the end of the process, you will be ready to create a [**Studyset**](/compose-docs/guide/glossary#studyset) of related studies that are amenable for neuroimaging meta-analysis + +## Getting Started + +The curation interface uses columns as a way to label studies based on their current status. +The left most column is the starting point and all studies imported into the project will begin there. +The right most column is the **inclusion column** and is the place where studies will go to be included in the meta-analysis. + +The goal is to get studies from the left most starting column, and narrow them down to a final subset of included studies in the right most column. +If a study is not eligible for inclusion at any point, it should be marked as "excluded" before reaching the inclusion column. + +The curation step is complete when all studies have been categorized, either by being included or excluded. + +When you first begin *Curation*, you will choose between different workflows, which vary in how rigorous or systematic the selection of studies will be. + +:::tip How specific to be? + +Performing a systematic meta-analysis involves a substantial amount of effort. It is up to you, the researcher, how rigorous to be in this process. We reccomend thinking about your *goals* prior to starting this process so that you can have clear inclusion guidelines. If you are looking for an exploratory analysis, we reccomend following the tutorial for *automated meta-analysis*, which replaces manual curation with an automated selection of studies. Note that automated meta-analyses are not a replacement for a careful systematic meta-analysis. +::: + +### PRISMA Workflow + +PRISMA stands for the **Preferred Reporting Items for Systematic Review and Meta-Analyses**. The +[PRISMA guidelines](http://www.prisma-statement.org/?AspxAutoDetectCookieSupport=1) are a set of rules for reporting a +systematic review, and are the gold standard for producing a proper, rigorous, and transparent meta-analysis. + +If you are trying to create a rigorous [manual meta-analysis](/compose-docs/tutorial/manual), or if you are trying to create a +[PRISMA compliant semi-automated meta-analysis](/compose-docs/tutorial/semi-automated), you will want to select this option. + +When you select this option, neurosynth-compose will automatically initialize the curation step with 4 distinct columns as +dictated by PRISMA guidelines: **Identification, Screening, Eligibility, Included**. + +After importing studies into neurosynth, they will be placed into the identification column and studies are triaged from there. + +:::info PRISMA Summary +The **Identification** column is where all imported studies are deposited into initially. As alluded to by the name, the identification +column is where you identify all records yielded from your search. In this column, you wil exclude studies purely based on whether they are +duplicates of existing studies. All other studies are promoted. + +The **Screening** column consists of all records that have been screened for duplicates. In this column, you want to review the titles/abstracts of studies +and exclude purely based on whether they are irrelevant to your research question or domain. All other studies are promoted. + +The **Eligibility** column consists of all records that have been screened for duplicates and irrelevant content. In this column, you want to +review the full text of studies and exclude based on whether the study described aligns with the standards of the meta-analysis itself. Reasons +for exclusion may include wrong setting, wrong patient population, wrong intervention, wrong paragdigm, etc. + +The **Included** column consists of all records that have passed previous levels of exclusion and can be considered for the next step of the project. + +For more information, consult the [PRISMA guidelines](http://www.prisma-statement.org/?AspxAutoDetectCookieSupport=1). +::: + +### Simple Workflow + +If you want to create a [semi-automated meta-analysis](/compose-docs/tutorial/semi-automated) (i.e. perform manual review on a large-scale study search), you'll want to select this option. + +This workflow is initalized with only two columns. As before, the left most column is where studies will be placed when they are imported. However, unlike a full PRISMA workflow, all exclusion occurs in this column. All studies not excluded are then promoted to the right most column for inclusion into the meta-analysis. + +## Importing + +To begin importing studies into your project clicking the **IMPORT STUDIES** button. + +You will be asked to choose a source, name your import, and address +any potential duplicate studies. + +:::tip +We recommend giving each import a meaningful name. This will be useful when you come back +and want to know where a certain study was imported from. +::: + +### Import from Neurostore + +Neurostore indexes a large number of neuroimaging studies which are ready for meta-analysis. Studies in Neurostore have been pre-processed, including extracting peak activation coordinates from Tables in the text, and computing semantic features from the abstract/full text. Neurostore also indexes studies which other users have annotated and made available to others for re-use. + +Importing from Neurostore utilizes the Study search UI similar to the [Study Page](https://compose.neurosynth.org/studies). +After entering your search, click the bottom right button to import the searched studies into your project. + +:::tip +Importing from Neurostore can save you a lot of time, as these studies are much more likely to be amenable to meta-analysis, and have pre-extracted coordinates. However, note that some manual annotation may still be required to verify the coordinate extraction, and choose the relevant Analysis (i.e. contrast) for final inclusion. +::: + +### Import from PubMed + +Use this option to import studies directly from PubMed. To start, you need to go to the [PubMed Site](https://pubmed.ncbi.nlm.nih.gov/) +and either enter in a search or navigate to a previously created collection. + +To import the search or collection from PubMed into neurosynth-compose, you will need a text file containing a list of PMIDs. +You can obtain this by going to your collection/search and clicking the **Save** button. Set **Selection** to **All results** +and set **Format** to **PMID**. Click **Create file** and your text file containing the PMIDs will be generated and downloaded. + +:::caution +Neurosynth-Compose uses the PubMed API to import studies. As a result, the maximum number of PMIDs that can be imported at once is 1,500. +If your collection has more than 1,500 PMIDs, split the import into multiple files. +::: + +### Import from BibTex/RIS/endnote + +Use this option to import studies via a .bib, .RIS, or .enw file. This may be useful if you want to import from a citation manager like Zotero. + +### Custom Studies + +If there is any record that cannot be easily imported using one of the methods listed above, you can also manually create a study. This may be necessary +to include resources like unpublished studies. + +### Duplicates + +If duplicates are detected in your import, you will be asked how to re-concile them by choosing which of the studies to keep by choosing "KEEP THIS STUDY". Matching duplicates will be automatically marked for exclusion. Note that as a user, you can over-ride any of these selection at any time, and choose which studies to keep or exclude. + +:::info +*Neurosynth Compose* does not delete studies. If a study is marked as a duplicate, it is marked as **excluded** but it is not discarded to ensure complete provenance. +::: + +There are two potential ways that duplicates can occur: + +#### Duplicates are detected between the studies being imported and the studies already in the project + +If any study being important has the same title, PMID, or DOI is the same as +one already in the project, you will be asked reconcile these duplicates. + +Note that if you mark a study that is already promoted as a duplicate, it will be "demoted" back to the first column and marked as "duplicate". It is reccomended to mark as duplicate the incoming study to avoid this. + +#### Duplicates are detected within the file you are importing + +Although rare, it is possible to have duplicates within a given import. For example, if within a RIS file there are duplicate entries. In this case, you will be asked to select which study to keep. Studies marked as duplicates will still be imported but marked as excluded. + +## Excluding and Promoting Studies + +Once studies have been imported into the first column of the curation phase, they need to be reviewed for inclusion into your meta-analysis. +All studies must be either excluded or moved to the inclusion column in order to progress to the extraction phase. + +To begin, either click on the button at the top of the column or click on any study in the column. This will open up a page which will show the study +along with the following options: **PROMOTE, NEEDS REVIEW**, and **EXCLUDE**. There is also a button to **ADD TAGS** which will assign an informational tag to the study. + +### Exclude + +To exclude a study, click the **EXCLUDE** button and select the exclusion reason. You can either choose from the preset exclusion reasons or you can begin +typing to create a new one. + +:::tip +For the PRISMA workflow, the default exclusion reason wil depend on the phase you are in (identification vs screening vs eligibility), to match the PRISMA guidelines. While we do not recommend it, you can click the arrow button and start typing in the input to create a new exclusion reason. +Revisit the [PRISMA workflow](./Curation#prisma-workflow) to review reccomended exclusion criteria. +::: + + +### Promote + +If a study meets inclusion critera (for the current phase), click **PROMOTE** to move the study forward to the next curation column. If it is moved into the right most inclusion column, then it will be included in the meta-analysis. + +:::tip +For the first column (especially in a PRISMA workflow) it can be tedious to promote non-duplicates to the next column. If all duplicates have been resolved, you can exit the dialog and click **PROMOTE ALL UNCATEGORIZED STUDIES** to advance all non-duplicate studies to the next column. +::: + +## On to Extraction + +When you have categorized all imported studies by either excluding them or moving them to the inclusion column, then you have +successfully completed the curation portion of the meta-analysis. + +*Neurosynth Compose* will detect this and reveal a new button: **MOVE TO EXTRACTION PHASE**. This will move you back to the project page and get you started on the next major component to building your meta-analysis: [extraction](./Extraction). \ No newline at end of file diff --git a/docs/guide/pages/Project/Extraction.md b/docs/guide/walkthrough/Project/Extraction.md similarity index 68% rename from docs/guide/pages/Project/Extraction.md rename to docs/guide/walkthrough/Project/Extraction.md index eb0fdf3..71c52cf 100644 --- a/docs/guide/pages/Project/Extraction.md +++ b/docs/guide/walkthrough/Project/Extraction.md @@ -5,19 +5,17 @@ sidebar_position: 0 # Extraction -## Introduction +Extraction is the second step in creating a meta-analysis. It involves taking the +new [**Studyset**](/compose-docs/guide/glossary#studyset) creates in the curation step and extracting relevant information from studies, such as [**annotations**](/compose-docs/guide/glossary#annotation), +and peak activation coordinates, or [**points**](/compose-docs/guide/glossary#point). -The extraction phase is the second step when creating a meta-analysis. It involves taking the -new [**studyset**](/compose-docs/guide/glossary#studyset) that has been curated during the previous phase -and going through the papers, extracting relevant information like [**annotations**](/compose-docs/guide/glossary#annotation), -relevant **metadata**, and [**points**](/compose-docs/guide/glossary#point). +## Getting Started +After the curation phase is complete, the user is redirected to the extraction phase. You can also access the Extraction phase through the main project page. -## Getting Started with Extraction - -Right after the curation phase is complete, the user is redirected to the project page. Here, the extraction phase starts when +Here, the extraction phase starts when a wizard that pops up and guides the user through the process of initializing the extraction phase. On top of creating the -initial [**annotation columns**](/compose-docs/guide/pages/Project/Extraction#annotations), this wizard also guides the user through the -process of [**ingestion** ](/compose-docs/guide/pages/Project/Extraction#ingestion) of the curated studies to create a new [**studyset**](/compose-docs/guide/glossary#studyset). +initial [**annotation columns**](./Extraction#annotations), this wizard also guides the user through the +process of [**ingestion** ](./Extraction#ingestion) of the curated studies to create a new [**studyset**](../../glossary#studyset). ## Ingestion diff --git a/docs/guide/pages/Project/Specification.md b/docs/guide/walkthrough/Project/Specification.md similarity index 100% rename from docs/guide/pages/Project/Specification.md rename to docs/guide/walkthrough/Project/Specification.md diff --git a/docs/guide/walkthrough/Project/index.mdx b/docs/guide/walkthrough/Project/index.mdx new file mode 100644 index 0000000..2fe8bae --- /dev/null +++ b/docs/guide/walkthrough/Project/index.mdx @@ -0,0 +1,24 @@ +--- +title: Project +sidebar_position: 0 +--- + +# Project + +A project organizes the the various steps needed to create a meta-analysis from start to finish. + +Within a project you will be able to: + 1. **[Curate](./Project/Curation)** studies of interest and select the ones to be included in the meta-analysis + 2. **[Extract](./Project/Extraction)** the relevant data such as activation coordinates and other meta-data + 3. **[Specify](./Project/Specification)** the algorithm and corrector you would like to use + 4. **Run** the meta-analysis and **View** the results + +In each project, you can define a define a single StudySe (i.e. a collection of related studies), and one or more MetaAnalysis specifications. + + +You can open a specific project by logging in, navigating to the +[My Projects](https://compose.neurosynth.org/projects) page, and selecting a project you've created. + +When you view a project for the first time, you'll notice that you'll default to the "Edit Project" tab. +The "View Meta-Analyses" tab will be disabled and will become enabled when you have created the first meta-analysis specification +for the project. \ No newline at end of file diff --git a/docs/guide/walkthrough/_category_.json b/docs/guide/walkthrough/_category_.json new file mode 100644 index 0000000..eacaa9c --- /dev/null +++ b/docs/guide/walkthrough/_category_.json @@ -0,0 +1,4 @@ +{ + "label": "Walkthrough", + "position": 0 +} diff --git a/docs/guide/walkthrough/index.mdx b/docs/guide/walkthrough/index.mdx new file mode 100644 index 0000000..8d4ac5d --- /dev/null +++ b/docs/guide/walkthrough/index.mdx @@ -0,0 +1,14 @@ +--- +title: Walkthrough +sidebar_position: 0 +--- + +import DocCardList from '@theme/DocCardList'; + +# Walkthrough + +This is a comprehensive walkthrough and reference for each page of Neurosynth Compose. + +If you're looking for a quickstart, check out our [Tutorials](/tutorial). + + \ No newline at end of file diff --git a/docs/guide/pages/meta-analyses.md b/docs/guide/walkthrough/meta-analyses.md similarity index 100% rename from docs/guide/pages/meta-analyses.md rename to docs/guide/walkthrough/meta-analyses.md diff --git a/docs/guide/pages/studies.md b/docs/guide/walkthrough/studies.md similarity index 100% rename from docs/guide/pages/studies.md rename to docs/guide/walkthrough/studies.md diff --git a/docs/guide/pages/studysets.md b/docs/guide/walkthrough/studysets.md similarity index 100% rename from docs/guide/pages/studysets.md rename to docs/guide/walkthrough/studysets.md