Missing text for some inputs

[adelavega]

File /data/alejandro/projects/neurostore-text-extraction/ns_pipelines/dataset.py:69, in __post_init__(self)
     67     raise ValueError(f"Coordinates file {self.coordinates} does not exist.")
     68 if self.text and not self.text.exists():
---> 69     raise ValueError(f"Text file {self.text} does not exist.")
     70 if self.metadata and not self.metadata.exists():
     71     raise ValueError(f"Metadata file {self.metadata} does not exist.")

ValueError: Text file ../ns-pond/data/8EiPHN7WvuMY/processed/pubget/text.txt does not exist.

@jdkent I'm signing off for the day bet let's take a look at this Monday

[jdkent]

files without text.

Error loading processed data for 8EiPHN7WvuMY: Text file /data/alejandro/projects/ns-pond/data/8EiPHN7WvuMY/processed/pubget/text.txt does not exist.
Error loading processed data for 4m5jAQRAGPAn: Text file /data/alejandro/projects/ns-pond/data/4m5jAQRAGPAn/processed/pubget/text.txt does not exist.
Error loading processed data for ior7TLpUgyvn: Text file /data/alejandro/projects/ns-pond/data/ior7TLpUgyvn/processed/pubget/text.txt does not exist.

identifiers

{"pmid": "15706052", "doi": "10.1155/2004/974094", "pmcid": "PMC1434895"}
{"pmid": "21606577", "doi": "10.3233/BEN-2011-0278", "pmcid": "PMC5377980"}
{"pmid": "20714062", "doi": "10.3233/BEN-2010-0268", "pmcid": "PMC3776583"}

• https://pmc.ncbi.nlm.nih.gov/articles/PMC3776583/
  • only the PDF is available as full text
• https://pmc.ncbi.nlm.nih.gov/articles/PMC5377980/
  • only the PDF is available as full text
• https://pmc.ncbi.nlm.nih.gov/articles/PMC1434895/
  • only the PDF is available as full text

All of these articles are from Behavioral Neurology