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Some roadblocks were encountered while developing this function (mainly about files in work directories). We don't want to have the paths to the work directory in a samplesheet, but there is no decent method to fetch the path to the published file (AFAIK). Putting this issue on hold for now
It might also be a better idea to simply start using the index file creation in the new workflow output definitions in Nextflow itself. These don't have any validation though.
This function will basically do the reverse of
samplesheetToList
. Taking in a list, output file name and a schema file.It will validate the list and convert it to the samplesheet file.
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