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v0.3.2 updates
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Jon Palmer authored and Jon Palmer committed Mar 22, 2016
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Expand Up @@ -38,9 +38,10 @@ Clustering: cluster cluster OTUs (using UPARSE algorithm)
filter OTU table filtering
taxonomy Assign taxonomy to OTUs
Utilities: heatmap Create heatmap from OTU table
summarize Summarize Taxonomy (create OTU-like tables and/or stacked bar graphs for each level of taxonomy)
Utilities: summarize Summarize Taxonomy (create OTU-like tables and/or stacked bar graphs for each level of taxonomy)
funguild Run FUNGuild (annotate OTUs with ecological information)
meta pivot OTU table and append to meta data
heatmap Create heatmap from OTU table
SRA De-multiplex data and create meta data for NCBI SRA submission
Setup: install Download/install pre-formatted taxonomy DB (UNITE DB formatted for UFITS). Only need to run once.
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